Variant report

Variant	rs10761241
Chromosome Location	chr9:96368536-96368537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96363030..96364591-chr9:96367019..96369226,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10117225	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10123378	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10739951	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761238	0.90[ASN][1000 genomes]
rs10761240	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761242	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761243	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821168	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821169	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821173	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821174	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821175	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821176	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821179	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821180	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821181	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10992792	0.90[ASN][1000 genomes]
rs10992797	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992798	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992799	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992800	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992804	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10992805	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11791934	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13291079	0.82[EUR][1000 genomes]
rs13294381	0.90[ASN][1000 genomes]
rs1412048	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1412049	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2398845	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2398846	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2398847	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2895249	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4568663	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7857266	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96352400-96369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:96352400-96384600	Weak transcription	NHLF	lung
3	chr9:96361000-96369400	Weak transcription	Dnd41	blood
4	chr9:96361400-96372000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:96361400-96380400	Weak transcription	Fetal Brain Male	brain
6	chr9:96361600-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:96363000-96368600	Weak transcription	Fetal Lung	lung
8	chr9:96363200-96368800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:96363200-96369000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:96363200-96374200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:96363200-96374600	Weak transcription	Gastric	stomach
12	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:96363400-96368600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:96363600-96383600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:96363800-96374000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:96363800-96374400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:96364000-96368800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr9:96364200-96369200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:96364200-96380600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:96366000-96374600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:96366200-96375000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:96366400-96379400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:96366600-96371600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:96366600-96373200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
26	chr9:96367600-96368600	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr9:96367600-96368800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:96368200-96371800	Weak transcription	Primary B cells from cord blood	blood
29	chr9:96368400-96368600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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