Variant report

Variant	rs13285064
Chromosome Location	chr9:96284850-96284851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96283749..96287240-chr9:96288399..96291092,3	K562	blood:
2	chr9:96278724..96281294-chr9:96283081..96285331,2	MCF-7	breast:
3	chr9:96283725..96286210-chr9:96295054..96296759,2	MCF-7	breast:
4	chr9:96283779..96285803-chr9:96306201..96308821,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10512223	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055710	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10739950	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761227	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761228	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761229	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761230	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761235	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761238	0.88[CEU][hapmap]
rs10821128	0.88[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821129	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821130	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821132	1.00[YRI][hapmap]
rs10821134	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821136	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821137	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821138	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821139	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821140	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821141	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821142	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821143	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821145	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821146	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821147	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821154	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821159	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821160	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821163	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821168	0.85[CEU][hapmap]
rs10992746	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992748	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992749	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992751	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992754	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992756	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992757	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992759	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992790	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992792	0.89[CEU][hapmap]
rs11790060	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11790449	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11791374	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12376738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377399	0.87[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12377707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379660	0.84[CEU][hapmap]
rs12380167	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1412050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556416	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909199	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2150749	0.88[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183760	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297376	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34866682	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34883241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016074	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4307405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743922	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743923	0.84[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs4743924	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744240	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744242	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744246	0.89[AMR][1000 genomes]
rs4744247	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744249	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744250	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744253	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs564	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7864396	0.84[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7869969	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs882851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
9	chr9:96264000-96286600	Weak transcription	NH-A	brain
10	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
11	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
12	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:96273800-96286600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
18	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
20	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:96276200-96286000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:96276200-96287800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr9:96278800-96286800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
32	chr9:96279000-96297400	Strong transcription	HepG2	liver
33	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
34	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
35	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:96280000-96288200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:96280600-96285400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:96280600-96285600	Weak transcription	HMEC	breast
39	chr9:96281000-96285000	Weak transcription	Brain Angular Gyrus	brain
40	chr9:96281000-96285000	Weak transcription	A549	lung
41	chr9:96281000-96285400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:96281000-96285600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:96281000-96285800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:96281200-96285000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:96281200-96285000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:96281200-96285600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:96281200-96285600	Weak transcription	NHEK	skin
48	chr9:96281200-96286800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr9:96281200-96287600	Weak transcription	Brain Substantia Nigra	brain
50	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas

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