Variant report

Variant	rs7864396
Chromosome Location	chr9:96251318-96251319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96246714..96249003-chr9:96251017..96253924,2	K562	blood:
2	chr9:96212792..96216621-chr9:96248855..96253856,5	MCF-7	breast:
3	chr9:96248016..96251380-chr9:96259927..96262755,3	MCF-7	breast:
4	chr9:96250614..96253263-chr9:96255648..96258129,2	K562	blood:
5	chr9:96244628..96248113-chr9:96249700..96253077,4	MCF-7	breast:
6	chr9:96250087..96251859-chr9:96255047..96257485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10512223	0.84[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes]
rs1055710	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs10739950	0.88[AMR][1000 genomes]
rs10761227	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761228	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10761229	0.89[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761230	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761231	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs10761232	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs10761233	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs10761235	0.85[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10821128	1.00[ASW][hapmap];0.88[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10821129	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs10821130	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10821132	1.00[YRI][hapmap]
rs10821134	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821136	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821137	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821138	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821139	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821140	0.90[AMR][1000 genomes]
rs10821141	1.00[ASW][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.90[AMR][1000 genomes]
rs10821142	0.84[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs10821143	0.83[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10821145	0.84[CEU][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes]
rs10821146	0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs10821147	1.00[ASW][hapmap];0.84[CEU][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.88[AMR][1000 genomes]
rs10821148	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs10821150	0.82[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10821151	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs10821152	0.88[AMR][1000 genomes]
rs10821153	0.88[AMR][1000 genomes]
rs10821154	0.87[AMR][1000 genomes]
rs10821157	0.88[AMR][1000 genomes]
rs10821158	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs10821159	0.80[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10821160	1.00[ASW][hapmap];0.96[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10992746	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992748	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992749	0.89[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992751	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992754	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992756	0.83[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs10992757	0.84[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs10992759	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs10992768	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	0.88[AMR][1000 genomes]
rs10992772	0.82[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs10992779	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs10992780	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs10992781	0.82[CEU][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes]
rs11790060	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11790449	0.80[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs11791374	0.89[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12376738	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes]
rs12377399	0.86[CEU][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12377707	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs12379660	0.84[CEU][hapmap];0.94[GIH][hapmap]
rs12380167	0.87[AMR][1000 genomes]
rs13285064	0.84[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1412050	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs1556416	1.00[ASW][hapmap];0.84[CEU][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs16909199	0.90[AMR][1000 genomes]
rs2150749	0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs2183760	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes]
rs2297376	1.00[ASW][hapmap];0.80[CEU][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs34866682	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34883241	0.88[AMR][1000 genomes]
rs36016074	0.86[AMR][1000 genomes]
rs3813387	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs3813388	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs4307405	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs4743922	0.89[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4743923	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743924	0.84[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs4743928	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs4744240	0.86[AMR][1000 genomes]
rs4744242	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744246	0.81[AMR][1000 genomes]
rs4744247	1.00[ASW][hapmap];0.84[CEU][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs4744249	0.89[ASW][hapmap];0.84[CEU][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs4744250	1.00[ASW][hapmap];0.84[CEU][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes]
rs4744253	0.88[AMR][1000 genomes]
rs4744254	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]
rs564	0.83[AFR][1000 genomes]
rs7869969	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs882851	0.84[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7864396	FAM120A	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
3	chr9:96231600-96256400	Weak transcription	NH-A	brain
4	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
7	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
11	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
12	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
14	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
16	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
17	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
18	chr9:96241800-96259800	Strong transcription	Dnd41	blood
19	chr9:96242600-96256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:96242800-96251600	Weak transcription	HUVEC	blood vessel
21	chr9:96242800-96254800	Weak transcription	Brain Angular Gyrus	brain
22	chr9:96242800-96256800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:96243200-96259800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:96243400-96251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:96243400-96251800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr9:96243400-96256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:96243400-96258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr9:96244800-96262000	Strong transcription	Primary T cells from cord blood	blood
31	chr9:96245000-96253400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:96245200-96256200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:96245400-96256400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:96246000-96252600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:96246200-96251600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:96246200-96255200	Strong transcription	Fetal Intestine Small	intestine
37	chr9:96246400-96251800	Strong transcription	HSMM	muscle
38	chr9:96246400-96253400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:96246800-96251600	Weak transcription	Right Ventricle	heart
40	chr9:96246800-96255200	Weak transcription	Ovary	ovary
41	chr9:96246800-96256400	Weak transcription	Aorta	Aorta
42	chr9:96246800-96256400	Weak transcription	Esophagus	oesophagus
43	chr9:96247600-96251600	Weak transcription	Brain Germinal Matrix	brain
44	chr9:96247600-96253200	Weak transcription	Brain Substantia Nigra	brain
45	chr9:96247600-96253400	Weak transcription	Osteobl	bone
46	chr9:96247600-96255200	Weak transcription	Adipose Nuclei	Adipose
47	chr9:96247600-96256400	Weak transcription	Spleen	Spleen
48	chr9:96247800-96252200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr9:96247800-96253000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr9:96248000-96253200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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