Variant report

Variant	rs4744246
Chromosome Location	chr9:96254464-96254465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96252755..96257145-chr9:96262506..96266410,6	MCF-7	breast:
2	chr9:96253909..96256008-chr9:96256047..96257816,2	MCF-7	breast:
3	chr9:96212174..96216414-chr9:96253378..96256290,5	MCF-7	breast:
4	chr9:96253295..96255583-chr9:96338896..96341692,2	K562	blood:
5	chr9:96217110..96219657-chr9:96251962..96254616,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10512223	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1055710	0.85[AMR][1000 genomes]
rs10739950	0.89[AMR][1000 genomes]
rs10761227	0.91[AMR][1000 genomes]
rs10761228	0.87[AMR][1000 genomes]
rs10761229	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10761230	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10761231	0.89[AMR][1000 genomes]
rs10761232	0.89[AMR][1000 genomes]
rs10761233	0.89[AMR][1000 genomes]
rs10761235	0.89[AMR][1000 genomes]
rs10821128	0.91[AMR][1000 genomes]
rs10821129	0.91[AMR][1000 genomes]
rs10821130	0.91[AMR][1000 genomes]
rs10821134	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821136	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821137	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821138	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821139	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821140	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821141	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821142	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821143	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821145	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821146	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821147	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821148	0.89[AMR][1000 genomes]
rs10821150	0.89[AMR][1000 genomes]
rs10821151	0.89[AMR][1000 genomes]
rs10821152	0.89[AMR][1000 genomes]
rs10821153	0.89[AMR][1000 genomes]
rs10821154	0.87[AMR][1000 genomes]
rs10821157	0.89[AMR][1000 genomes]
rs10821158	0.89[AMR][1000 genomes]
rs10992746	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992748	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992749	0.90[AMR][1000 genomes]
rs10992751	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992754	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992756	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992757	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992759	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992768	0.89[AMR][1000 genomes]
rs10992770	0.89[AMR][1000 genomes]
rs10992772	0.89[AMR][1000 genomes]
rs10992779	0.89[AMR][1000 genomes]
rs10992780	0.89[AMR][1000 genomes]
rs10992781	0.89[AMR][1000 genomes]
rs11790060	0.91[AMR][1000 genomes]
rs11790449	0.89[AMR][1000 genomes]
rs11791374	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12376738	0.87[AMR][1000 genomes]
rs12377399	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12377707	0.89[AMR][1000 genomes]
rs12380167	0.87[AMR][1000 genomes]
rs13285064	0.89[AMR][1000 genomes]
rs1412050	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1556416	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16909199	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2150749	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2183760	0.89[AMR][1000 genomes]
rs2297376	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34866682	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34883241	0.89[AMR][1000 genomes]
rs36016074	0.86[AMR][1000 genomes]
rs3813387	0.89[AMR][1000 genomes]
rs3813388	0.89[AMR][1000 genomes]
rs4307405	0.89[AMR][1000 genomes]
rs4743922	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4743923	0.81[AMR][1000 genomes]
rs4743924	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743928	0.89[AMR][1000 genomes]
rs4744240	0.89[AMR][1000 genomes]
rs4744242	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744247	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744249	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744250	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744253	0.89[AMR][1000 genomes]
rs4744254	0.89[AMR][1000 genomes]
rs7864396	0.81[AMR][1000 genomes]
rs7869969	0.91[AMR][1000 genomes]
rs882851	0.89[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96256400	Weak transcription	NH-A	brain
3	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
5	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
9	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
10	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
11	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
12	chr9:96241800-96259800	Strong transcription	Dnd41	blood
13	chr9:96242600-96256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:96242800-96254800	Weak transcription	Brain Angular Gyrus	brain
15	chr9:96242800-96256800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:96243200-96259800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:96243400-96256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:96243400-96258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:96244800-96262000	Strong transcription	Primary T cells from cord blood	blood
22	chr9:96245200-96256200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:96245400-96256400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:96246200-96255200	Strong transcription	Fetal Intestine Small	intestine
25	chr9:96246800-96255200	Weak transcription	Ovary	ovary
26	chr9:96246800-96256400	Weak transcription	Aorta	Aorta
27	chr9:96246800-96256400	Weak transcription	Esophagus	oesophagus
28	chr9:96247600-96255200	Weak transcription	Adipose Nuclei	Adipose
29	chr9:96247600-96256400	Weak transcription	Spleen	Spleen
30	chr9:96248000-96256400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:96248000-96257000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:96248000-96259000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:96248000-96259600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:96248200-96254600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:96248200-96256200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:96248200-96256400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:96248200-96256600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:96248200-96256600	Weak transcription	HSMMtube	muscle
39	chr9:96248600-96255800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:96248600-96257200	Weak transcription	NHDF-Ad	bronchial
41	chr9:96248800-96256400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:96249000-96262400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:96249200-96254800	Strong transcription	NHEK	skin
44	chr9:96249200-96256600	Weak transcription	Fetal Lung	lung
45	chr9:96249600-96255200	Strong transcription	Fetal Intestine Large	intestine
46	chr9:96249800-96257200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:96250000-96260000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:96250400-96255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:96250400-96262600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:96250400-96262600	Strong transcription	Rectal Mucosa Donor 31	rectum

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