Variant report

Variant	rs10739950
Chromosome Location	chr9:96289269-96289270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96283749..96287240-chr9:96288399..96291092,3	K562	blood:
2	chr9:96211644..96215224-chr9:96285600..96289647,5	MCF-7	breast:
3	chr9:96212405..96217053-chr9:96287727..96291116,5	MCF-7	breast:
4	chr9:96287109..96291346-chr9:96292892..96295512,4	MCF-7	breast:
5	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
6	chr9:96287503..96289688-chr9:96299052..96301851,2	K562	blood:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10512223	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1055710	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761227	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761228	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761229	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761230	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761232	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761235	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821128	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821129	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821130	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821134	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821136	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821137	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821138	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821139	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821140	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821141	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821142	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821143	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821150	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821154	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821159	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821160	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821163	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992746	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992748	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992749	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992751	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992754	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992756	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992757	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992759	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992790	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11790060	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11790449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11791374	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12376738	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12377399	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12377707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12380167	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13285064	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1412050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1556416	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16909199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2150749	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2183760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2297376	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34866682	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34883241	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36016074	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3813387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3813388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4307405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743922	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743923	0.88[AMR][1000 genomes]
rs4743924	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744240	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744242	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744246	0.89[AMR][1000 genomes]
rs4744247	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744249	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7864396	0.88[AMR][1000 genomes]
rs7869969	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs882851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
5	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
7	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
16	chr9:96279000-96297400	Strong transcription	HepG2	liver
17	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
18	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas
21	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
22	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:96283200-96289400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr9:96283200-96291200	Weak transcription	Fetal Brain Female	brain
25	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr9:96284200-96290600	Enhancers	Fetal Heart	heart
27	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:96284800-96292000	Strong transcription	Fetal Intestine Small	intestine
31	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
32	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:96285000-96292000	Strong transcription	Fetal Muscle Leg	muscle
35	chr9:96285000-96292200	Strong transcription	Primary T cells from cord blood	blood
36	chr9:96285000-96292200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:96285000-96292200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:96285000-96293200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:96285000-96298800	Strong transcription	A549	lung
43	chr9:96285000-96301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:96285000-96304000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:96285000-96327000	Strong transcription	Dnd41	blood
47	chr9:96285200-96291000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr9:96285200-96291800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr9:96285200-96296600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:96285200-96299600	Strong transcription	Fetal Intestine Large	intestine

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