Variant report

Variant	rs10821159
Chromosome Location	chr9:96314397-96314398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96298040..96299935-chr9:96313756..96315423,2	K562	blood:
2	chr9:96308737..96311417-chr9:96314055..96315720,2	MCF-7	breast:
3	chr9:96309589..96311843-chr9:96313849..96315976,2	K562	blood:
4	chr9:96299951..96301653-chr9:96312978..96315917,2	MCF-7	breast:
5	chr9:96213112..96215429-chr9:96313984..96316508,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10117691	0.82[CEU][hapmap]
rs10156602	0.82[CEU][hapmap]
rs10512223	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1055710	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs10739950	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761227	0.88[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10761228	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10761229	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761230	0.89[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761231	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10761232	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761233	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10761235	0.95[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10761238	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10821128	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10821129	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs10821130	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs10821132	1.00[YRI][hapmap]
rs10821134	0.89[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821136	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821137	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821138	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821139	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821140	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821141	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821142	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821143	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821145	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821146	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821147	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821148	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821150	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821151	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821152	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821153	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821154	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821157	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821158	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821160	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821163	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821168	0.89[CEU][hapmap]
rs10992746	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992748	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992749	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992751	0.91[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992754	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992756	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992757	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992759	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992768	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992772	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992779	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992780	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992781	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992790	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992792	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs11790060	0.86[AMR][1000 genomes]
rs11790449	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11791374	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12376738	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12377399	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12377707	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12379660	0.81[CEU][hapmap]
rs12380167	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13285064	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13294381	0.83[EUR][1000 genomes]
rs1412050	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1556416	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16909199	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2150749	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2183760	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2297376	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34866682	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34883241	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36016074	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3813387	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3813388	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4307405	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743922	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743923	0.80[CEU][hapmap]
rs4743924	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743928	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744240	0.84[AMR][1000 genomes]
rs4744242	0.89[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744247	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744249	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744250	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744253	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744254	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs564	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864396	0.80[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7869969	0.88[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs882851	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
6	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:96285000-96327000	Strong transcription	Dnd41	blood
11	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:96285400-96327800	Strong transcription	Liver	Liver
13	chr9:96289200-96316000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:96291800-96317000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:96291800-96317000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:96292000-96316600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:96295800-96315600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:96299200-96326800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:96299400-96324200	Weak transcription	Fetal Brain Male	brain
20	chr9:96299400-96327800	Strong transcription	Placenta	Placenta
21	chr9:96300400-96322400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr9:96301200-96327200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:96302000-96328000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:96302600-96315800	Strong transcription	Fetal Lung	lung
25	chr9:96304400-96328200	Strong transcription	Adipose Nuclei	Adipose
26	chr9:96304600-96315600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:96305200-96326800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:96305200-96327000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:96305400-96327000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:96305400-96327200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:96305400-96327600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:96305600-96315400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:96305800-96317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:96305800-96319800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:96307600-96329000	Weak transcription	Right Atrium	heart
36	chr9:96308800-96324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:96309000-96314800	Weak transcription	Brain Substantia Nigra	brain
38	chr9:96309000-96318200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:96309200-96316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:96309200-96317000	Weak transcription	Colonic Mucosa	Colon
41	chr9:96309200-96319000	Weak transcription	Brain Angular Gyrus	brain
42	chr9:96309400-96317600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:96309600-96320200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr9:96309800-96314400	Weak transcription	Gastric	stomach
45	chr9:96309800-96316400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:96309800-96316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:96309800-96317200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr9:96309800-96317800	Weak transcription	Ovary	ovary
49	chr9:96309800-96320000	Weak transcription	Aorta	Aorta
50	chr9:96309800-96320000	Weak transcription	Pancreas	Pancrea

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