Variant report

Variant	rs10821163
Chromosome Location	chr9:96343060-96343061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96341833..96343358-chr9:96346773..96348583,2	K562	blood:
2	chr9:96211528..96214948-chr9:96337573..96343441,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10114002	0.82[CEU][hapmap]
rs10116422	0.82[CEU][hapmap]
rs10117225	0.82[CEU][hapmap]
rs10117691	0.85[CEU][hapmap]
rs10123378	0.82[CEU][hapmap]
rs10156602	0.85[CEU][hapmap]
rs10512223	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10739950	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10761227	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10761229	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10761230	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10761231	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761232	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10761233	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761235	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761238	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10821128	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs10821129	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs10821130	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs10821134	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10821136	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10821137	0.82[AMR][1000 genomes]
rs10821138	0.83[AMR][1000 genomes]
rs10821139	0.83[AMR][1000 genomes]
rs10821140	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821141	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821142	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821143	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821145	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821146	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821147	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821148	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821150	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821151	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821152	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821153	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821154	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821157	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821158	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821159	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821168	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10992746	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992748	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992749	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs10992751	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992754	0.83[AMR][1000 genomes]
rs10992756	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992757	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992759	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992768	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992770	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992772	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992779	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992780	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992781	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992790	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992792	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs10992797	0.82[CEU][hapmap]
rs11790060	0.85[AMR][1000 genomes]
rs11790449	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11791374	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs12376738	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12377399	0.83[AMR][1000 genomes]
rs12377707	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12380167	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13285064	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13294381	0.84[EUR][1000 genomes]
rs1412048	0.82[CEU][hapmap]
rs1412050	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1556416	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16909199	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2150749	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2183760	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2297376	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34866682	0.83[AMR][1000 genomes]
rs34883241	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36016074	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3813387	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3813388	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4307405	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4568663	0.82[CEU][hapmap]
rs4743922	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs4743924	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4743928	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744240	0.83[AMR][1000 genomes]
rs4744242	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs4744247	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744249	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744250	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744253	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744254	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs564	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869969	0.84[CEU][hapmap];0.85[AMR][1000 genomes]
rs882851	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96340000-96344400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96340400-96344000	Weak transcription	Aorta	Aorta
3	chr9:96340400-96344200	Weak transcription	K562	blood
4	chr9:96340400-96344800	Enhancers	Gastric	stomach
5	chr9:96340400-96344800	Enhancers	Spleen	Spleen
6	chr9:96340400-96345200	Enhancers	Liver	Liver
7	chr9:96340400-96345600	Enhancers	Stomach Mucosa	stomach
8	chr9:96340400-96348200	Weak transcription	Fetal Kidney	kidney
9	chr9:96340400-96351200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:96340600-96343800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:96340600-96343800	Enhancers	Esophagus	oesophagus
12	chr9:96340600-96344200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:96340600-96344200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:96340600-96344400	Weak transcription	HSMMtube	muscle
15	chr9:96340600-96344600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:96340600-96344800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:96340600-96344800	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:96340600-96345000	Enhancers	Adipose Nuclei	Adipose
19	chr9:96340600-96345000	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:96340600-96345000	Enhancers	Placenta	Placenta
21	chr9:96340600-96345000	Enhancers	Left Ventricle	heart
22	chr9:96340600-96346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:96340600-96351600	Weak transcription	Thymus	Thymus
24	chr9:96340800-96343200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr9:96340800-96343800	Enhancers	Colon Smooth Muscle	Colon
26	chr9:96340800-96344400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:96340800-96344400	Weak transcription	HUVEC	blood vessel
28	chr9:96340800-96344400	Weak transcription	NH-A	brain
29	chr9:96340800-96344800	Enhancers	Brain Angular Gyrus	brain
30	chr9:96340800-96344800	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr9:96340800-96344800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:96340800-96345000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:96340800-96345000	Enhancers	Brain Anterior Caudate	brain
34	chr9:96340800-96345000	Enhancers	Pancreas	Pancrea
35	chr9:96340800-96345000	Enhancers	Right Ventricle	heart
36	chr9:96340800-96345000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:96340800-96345200	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr9:96340800-96346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:96340800-96346800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:96341000-96343400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:96341000-96343400	Enhancers	Dnd41	blood
42	chr9:96341000-96343800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:96341000-96344000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr9:96341000-96344600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:96341000-96345200	Enhancers	Brain Hippocampus Middle	brain
46	chr9:96341000-96347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:96341000-96348800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:96341200-96347400	Weak transcription	Primary T cells from cord blood	blood
49	chr9:96341200-96351200	Weak transcription	NHDF-Ad	bronchial
50	chr9:96341400-96343200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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