Variant report

Variant	rs4744240
Chromosome Location	chr9:96218194-96218195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96216144..96218781-chr9:96233420..96235999,2	K562	blood:
2	chr6:56817242..56820030-chr9:96215701..96218251,2	MCF-7	breast:
3	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
4	chr9:96072987..96083429-chr9:96209751..96218385,15	MCF-7	breast:
5	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
6	chr9:96217110..96219657-chr9:96251962..96254616,2	K562	blood:

Variant related genes	Relation type
ENSG00000165238	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000151917	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10512223	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1055710	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739950	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761227	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761228	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761229	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761230	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761231	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761232	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761233	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761235	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821128	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821129	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821130	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821132	0.86[EUR][1000 genomes]
rs10821134	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821136	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821137	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821138	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821139	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821140	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821141	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821142	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821143	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821145	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821146	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821147	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821148	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821150	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821151	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821152	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821153	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821154	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821157	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821158	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821159	0.84[AMR][1000 genomes]
rs10821160	0.86[AMR][1000 genomes]
rs10821163	0.83[AMR][1000 genomes]
rs10992729	0.90[EUR][1000 genomes]
rs10992746	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992748	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992749	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992751	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992754	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992756	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992757	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992759	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992768	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992770	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992772	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992779	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992780	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992781	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs11790060	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11790449	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11791374	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12376738	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12377399	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12377707	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12379660	0.90[EUR][1000 genomes]
rs12380167	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13285064	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412050	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1556416	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16909199	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2150749	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2183760	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2297376	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34866682	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34883241	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36016074	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3813387	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3813388	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4307405	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743922	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743923	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743924	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4743928	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744242	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744246	0.89[AMR][1000 genomes]
rs4744247	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744249	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744250	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744253	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744254	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs564	0.86[AMR][1000 genomes]
rs7864396	0.86[AMR][1000 genomes]
rs7869969	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs882851	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96212600-96218400	Active TSS	GM12878-XiMat	blood
2	chr9:96216200-96220400	Weak transcription	Pancreas	Pancrea
3	chr9:96216200-96220400	Weak transcription	Spleen	Spleen
4	chr9:96216200-96220600	Weak transcription	Gastric	stomach
5	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:96216400-96220600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96216400-96220600	Weak transcription	Esophagus	oesophagus
8	chr9:96216400-96221000	Weak transcription	Aorta	Aorta
9	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:96216600-96219600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr9:96216800-96218600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:96216800-96218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:96216800-96218800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:96216800-96219200	Enhancers	Liver	Liver
19	chr9:96216800-96219400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:96216800-96219800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:96216800-96220200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr9:96216800-96220400	Enhancers	Fetal Intestine Small	intestine
23	chr9:96216800-96220400	Weak transcription	Left Ventricle	heart
24	chr9:96216800-96220400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr9:96216800-96220600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:96216800-96220600	Weak transcription	Placenta	Placenta
27	chr9:96216800-96220600	Weak transcription	Ovary	ovary
28	chr9:96216800-96220600	Weak transcription	Right Ventricle	heart
29	chr9:96216800-96220800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:96216800-96222400	Enhancers	HepG2	liver
32	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
34	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
35	chr9:96217000-96218200	Weak transcription	Fetal Intestine Large	intestine
36	chr9:96217000-96218400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:96217000-96218400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:96217000-96218600	Weak transcription	HUVEC	blood vessel
39	chr9:96217000-96218800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr9:96217000-96218800	Weak transcription	NH-A	brain
41	chr9:96217000-96219600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:96217000-96219600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr9:96217000-96220000	Weak transcription	Fetal Thymus	thymus
44	chr9:96217000-96220400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:96217000-96220400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr9:96217000-96220400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:96217000-96220600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:96217000-96220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr9:96217000-96220600	Weak transcription	Fetal Kidney	kidney
50	chr9:96217000-96220600	Weak transcription	Fetal Muscle Leg	muscle

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