Variant report

Variant	rs10821132
Chromosome Location	chr9:96228952-96228953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96228099..96230540-chr9:96327402..96330040,2	K562	blood:
2	chr9:96226992..96229421-chr9:96235816..96238058,2	K562	blood:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10512223	0.81[EUR][1000 genomes]
rs1055710	0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs10761227	0.91[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10761228	0.85[EUR][1000 genomes]
rs10761229	0.91[CHB][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs10761230	0.91[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10761235	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs10821128	0.82[CHB][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10821129	0.91[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10821130	0.91[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10821134	0.91[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10821136	0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs10821137	0.86[EUR][1000 genomes]
rs10821138	0.86[EUR][1000 genomes]
rs10821139	0.86[EUR][1000 genomes]
rs10821140	0.80[EUR][1000 genomes]
rs10821141	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs10821142	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs10821143	0.87[CHB][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10821145	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs10821146	0.87[CHB][hapmap];0.80[EUR][1000 genomes]
rs10821147	0.87[CHB][hapmap];0.80[EUR][1000 genomes]
rs10821150	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs10821159	1.00[YRI][hapmap]
rs10821160	1.00[YRI][hapmap]
rs10992746	0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs10992748	0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs10992749	0.91[CHB][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs10992751	0.90[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10992754	0.86[EUR][1000 genomes]
rs10992756	0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs10992757	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs10992759	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs11790060	0.86[EUR][1000 genomes]
rs11791374	0.91[CHB][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs12377399	0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs13285064	1.00[YRI][hapmap]
rs1412050	0.80[EUR][1000 genomes]
rs1556416	0.87[CHB][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs16909199	0.81[EUR][1000 genomes]
rs2150749	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs2297376	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs34866682	0.86[EUR][1000 genomes]
rs4743922	0.91[CHB][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs4743924	0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs4744240	0.86[EUR][1000 genomes]
rs4744242	0.91[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs4744247	0.87[CHB][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs4744249	0.87[CHB][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs4744250	0.87[CHB][hapmap]
rs7864396	1.00[YRI][hapmap]
rs7869969	0.90[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10821132	FAM120AOS	cis	parietal	SCAN
rs10821132	C9orf102	cis	parietal	SCAN
rs10821132	FAM120A	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
5	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
6	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
7	chr9:96217400-96230800	Weak transcription	HSMM	muscle
8	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
9	chr9:96219200-96229000	Weak transcription	NH-A	brain
10	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:96221200-96229000	Weak transcription	Osteobl	bone
13	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
17	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:96224400-96229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:96225000-96229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:96225400-96229000	Weak transcription	HMEC	breast
26	chr9:96225400-96230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:96225600-96229000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:96225600-96230000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:96225600-96230400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
31	chr9:96225800-96230000	Enhancers	Primary B cells from cord blood	blood
32	chr9:96225800-96230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
36	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:96226000-96229400	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:96226000-96230000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
42	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr9:96226400-96231600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
45	chr9:96226600-96229000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:96226600-96230000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr9:96226600-96230000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:96226600-96230000	Enhancers	Fetal Heart	heart
49	chr9:96226600-96230600	Enhancers	Fetal Thymus	thymus
50	chr9:96226600-96231200	Enhancers	Fetal Intestine Large	intestine

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