Variant report

Variant	rs10992746
Chromosome Location	chr9:96231171-96231172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96230020..96231557-chr9:96243930..96246449,2	MCF-7	breast:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96230132..96232279-chr9:96234940..96236781,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10512223	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055710	0.91[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739950	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761227	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761228	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761231	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761232	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761233	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761235	0.95[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761238	0.81[CEU][hapmap]
rs10821128	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821129	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821130	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821132	0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs10821134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821137	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821140	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821141	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821142	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821143	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821145	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821146	0.87[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821147	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821148	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821150	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821151	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821152	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821153	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821154	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821157	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821158	0.92[CEU][hapmap];0.82[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821159	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821160	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821163	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992729	0.87[EUR][1000 genomes]
rs10992748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992756	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992757	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992759	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992768	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992770	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992772	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992779	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992780	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992781	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs10992792	0.82[CEU][hapmap]
rs11790060	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790449	0.89[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11791374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376738	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12377399	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377707	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12379660	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs12380167	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13285064	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1412050	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909199	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2150749	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183760	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297376	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34866682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34883241	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36016074	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813387	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813388	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307405	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743923	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743924	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743928	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744240	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744247	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744249	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744250	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744253	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744254	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs564	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864396	0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7869969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882851	0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
4	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
5	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
15	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
18	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
22	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr9:96226400-96231600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
25	chr9:96226600-96231200	Enhancers	Fetal Intestine Large	intestine
26	chr9:96226600-96231600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:96226600-96231600	Enhancers	Brain Hippocampus Middle	brain
28	chr9:96226600-96231600	Enhancers	Psoas Muscle	Psoas
29	chr9:96226600-96231600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr9:96227000-96232000	Enhancers	Brain Anterior Caudate	brain
31	chr9:96227200-96231200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr9:96227200-96231200	Enhancers	Adipose Nuclei	Adipose
33	chr9:96227600-96231800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr9:96227600-96232400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr9:96227800-96231600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:96227800-96231800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr9:96227800-96231800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr9:96227800-96231800	Enhancers	Left Ventricle	heart
39	chr9:96227800-96232000	Enhancers	Liver	Liver
40	chr9:96228000-96231200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:96228000-96231200	Enhancers	Right Atrium	heart
42	chr9:96228000-96231400	Enhancers	HUVEC	blood vessel
43	chr9:96228000-96231600	Enhancers	Brain Angular Gyrus	brain
44	chr9:96228000-96231600	Enhancers	Fetal Muscle Leg	muscle
45	chr9:96228000-96231600	Enhancers	Pancreas	Pancrea
46	chr9:96228000-96231800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:96228000-96232800	Enhancers	Right Ventricle	heart
48	chr9:96228200-96231200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:96228200-96231600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:96228200-96231600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links