Variant report

Variant	rs7869969
Chromosome Location	chr9:96217447-96217448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:96214286-96217706	GM12891	blood:	n/a	n/a
2	POLR2A	chr9:96217408-96217505	ProgFib	skin:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96216144..96218781-chr9:96233420..96235999,2	K562	blood:
2	chr6:56817242..56820030-chr9:96215701..96218251,2	MCF-7	breast:
3	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
4	chr9:96072987..96083429-chr9:96209751..96218385,15	MCF-7	breast:
5	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
6	chr9:96217110..96219657-chr9:96251962..96254616,2	K562	blood:
7	chr9:95763664..95766138-chr9:96216197..96217836,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM120AOS	TF binding region
ENSG00000165238	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000151914	Chromatin interaction
ENSG00000151917	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10512223	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1055710	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739950	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761228	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761231	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761232	0.91[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761233	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761235	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761238	0.80[CEU][hapmap]
rs10821128	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821132	0.90[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10821134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821137	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821138	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821139	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821140	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821141	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821142	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821143	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821145	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821146	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821147	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821148	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821150	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821151	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821152	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821153	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821154	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821157	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821158	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821159	0.88[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10821160	0.83[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs10821163	0.84[CEU][hapmap];0.85[AMR][1000 genomes]
rs10992729	0.91[EUR][1000 genomes]
rs10992746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992754	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992756	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992757	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992759	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992768	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992772	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992779	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992780	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992781	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992790	0.86[AMR][1000 genomes]
rs10992792	0.81[CEU][hapmap]
rs11790060	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11790449	0.88[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11791374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12376738	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12377399	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12377707	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12379660	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs12380167	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13285064	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1412050	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16909199	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2150749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2183760	0.91[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297376	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34866682	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34883241	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36016074	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813387	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813388	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4307405	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743923	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743924	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743928	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744240	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes]
rs4744247	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744249	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744250	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744253	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744254	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs564	0.88[AMR][1000 genomes]
rs7864396	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs882851	0.92[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96212600-96218400	Active TSS	GM12878-XiMat	blood
2	chr9:96216200-96220400	Weak transcription	Pancreas	Pancrea
3	chr9:96216200-96220400	Weak transcription	Spleen	Spleen
4	chr9:96216200-96220600	Weak transcription	Gastric	stomach
5	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:96216400-96220600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96216400-96220600	Weak transcription	Esophagus	oesophagus
8	chr9:96216400-96221000	Weak transcription	Aorta	Aorta
9	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:96216600-96217600	Enhancers	Brain Angular Gyrus	brain
11	chr9:96216600-96217600	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:96216600-96217600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:96216600-96217600	Enhancers	NHDF-Ad	bronchial
14	chr9:96216600-96217800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96216600-96217800	Enhancers	Stomach Smooth Muscle	stomach
16	chr9:96216600-96219600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr9:96216800-96217600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr9:96216800-96217600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:96216800-96217600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:96216800-96217600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:96216800-96217600	Enhancers	Brain Hippocampus Middle	brain
26	chr9:96216800-96217600	Enhancers	NHEK	skin
27	chr9:96216800-96217800	Enhancers	Brain Germinal Matrix	brain
28	chr9:96216800-96217800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr9:96216800-96217800	Enhancers	Osteobl	bone
30	chr9:96216800-96218600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr9:96216800-96218800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:96216800-96218800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr9:96216800-96219200	Enhancers	Liver	Liver
34	chr9:96216800-96219400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:96216800-96219800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:96216800-96220200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:96216800-96220400	Enhancers	Fetal Intestine Small	intestine
38	chr9:96216800-96220400	Weak transcription	Left Ventricle	heart
39	chr9:96216800-96220400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr9:96216800-96220600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:96216800-96220600	Weak transcription	Placenta	Placenta
42	chr9:96216800-96220600	Weak transcription	Ovary	ovary
43	chr9:96216800-96220600	Weak transcription	Right Ventricle	heart
44	chr9:96216800-96220800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr9:96216800-96222400	Enhancers	HepG2	liver
47	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
49	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
50	chr9:96217000-96217600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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