Variant report

Variant	rs10761227
Chromosome Location	chr9:96226511-96226512
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96223838..96225399-chr9:96225606..96227338,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:
4	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
5	chr9:96224023..96227190-chr9:96336323..96339584,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10512223	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1055710	0.95[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739950	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761228	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761229	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761230	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761231	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761232	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761233	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761235	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761238	0.80[CEU][hapmap]
rs10821128	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821132	0.91[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10821134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821137	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821138	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821139	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821140	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821141	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821142	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821143	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821145	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821146	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821147	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821148	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821150	0.95[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821151	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821152	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821153	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821154	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821157	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821158	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821159	0.88[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821160	0.83[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10821163	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992729	0.89[EUR][1000 genomes]
rs10992746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992748	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992749	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992754	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992756	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992757	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992759	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992768	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992772	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992779	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992780	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992781	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs10992792	0.81[CEU][hapmap]
rs11790060	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11790449	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11791374	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12376738	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12377399	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12377707	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12379660	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs12380167	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13285064	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1412050	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16909199	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2150749	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2183760	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297376	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34866682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34883241	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36016074	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813387	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813388	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4307405	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743922	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743923	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4743924	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743928	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744240	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744242	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes]
rs4744247	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744249	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744250	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744253	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744254	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs564	0.86[AMR][1000 genomes]
rs7864396	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7869969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882851	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
6	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
7	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
8	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:96217400-96230800	Weak transcription	HSMM	muscle
10	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
11	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
12	chr9:96219200-96229000	Weak transcription	NH-A	brain
13	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:96220600-96226600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:96220800-96227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr9:96221200-96228200	Weak transcription	Aorta	Aorta
18	chr9:96221200-96229000	Weak transcription	Osteobl	bone
19	chr9:96221400-96228000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:96221600-96226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:96221600-96226600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:96221600-96227200	Weak transcription	Gastric	stomach
23	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:96221800-96226600	Weak transcription	Fetal Lung	lung
25	chr9:96222000-96226800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:96222000-96226800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:96222000-96228000	Weak transcription	Brain Angular Gyrus	brain
28	chr9:96222000-96228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:96222000-96228600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:96222200-96226600	Weak transcription	Right Ventricle	heart
31	chr9:96222200-96227000	Weak transcription	Brain Anterior Caudate	brain
32	chr9:96222200-96227200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:96222200-96227200	Weak transcription	Adipose Nuclei	Adipose
34	chr9:96222200-96227400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr9:96222200-96228000	Weak transcription	Esophagus	oesophagus
36	chr9:96222200-96228000	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:96222200-96228000	Weak transcription	Ovary	ovary
38	chr9:96222200-96228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:96222200-96228200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr9:96222200-96228800	Weak transcription	NHLF	lung
41	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
44	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr9:96223000-96228000	Weak transcription	Lung	lung
46	chr9:96223200-96226600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:96223200-96227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr9:96223400-96226600	Weak transcription	Fetal Kidney	kidney
49	chr9:96223400-96226800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:96223400-96227800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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