Variant report

Variant	rs10821138
Chromosome Location	chr9:96247761-96247762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96246714..96249003-chr9:96251017..96253924,2	K562	blood:
2	chr9:96244628..96248113-chr9:96249700..96253077,4	MCF-7	breast:
3	chr9:96235140..96238887-chr9:96245460..96248852,5	K562	blood:
4	chr9:96241899..96244084-chr9:96246554..96249492,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10512223	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1055710	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10739950	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761227	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761228	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10761231	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761232	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761233	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761235	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821128	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821129	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821132	0.86[EUR][1000 genomes]
rs10821134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821137	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821140	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821141	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821142	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821145	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821146	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821147	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821148	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821150	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821151	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821152	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821153	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821154	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821157	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821158	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821159	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821160	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821163	0.83[AMR][1000 genomes]
rs10992729	0.87[EUR][1000 genomes]
rs10992746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992749	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992756	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992757	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992759	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992768	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992770	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992772	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992779	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992780	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992781	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs11790060	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11790449	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11791374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12376738	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12377399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12377707	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12379660	0.87[EUR][1000 genomes]
rs12380167	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13285064	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1412050	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1556416	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16909199	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2150749	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2183760	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2297376	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34866682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34883241	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36016074	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3813387	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3813388	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4307405	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743923	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743924	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743928	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744240	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744247	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744249	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744250	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744253	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744254	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs564	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864396	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7869969	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs882851	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
3	chr9:96231600-96256400	Weak transcription	NH-A	brain
4	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
9	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
14	chr9:96238200-96248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
16	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
18	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
20	chr9:96240000-96249800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
22	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
23	chr9:96241800-96247800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:96241800-96259800	Strong transcription	Dnd41	blood
25	chr9:96242000-96248000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:96242200-96248600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr9:96242400-96248000	Strong transcription	Liver	Liver
28	chr9:96242400-96248600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:96242600-96248600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:96242600-96256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:96242800-96250400	Weak transcription	HMEC	breast
32	chr9:96242800-96251600	Weak transcription	HUVEC	blood vessel
33	chr9:96242800-96254800	Weak transcription	Brain Angular Gyrus	brain
34	chr9:96242800-96256800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:96243200-96249000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:96243200-96259800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:96243400-96248200	Weak transcription	NHDF-Ad	bronchial
39	chr9:96243400-96251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:96243400-96251800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:96243400-96256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr9:96243400-96258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr9:96243600-96247800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:96243600-96248400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:96243600-96248400	Strong transcription	HepG2	liver
47	chr9:96244200-96247800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:96244600-96248400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr9:96244800-96247800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr9:96244800-96248000	Strong transcription	Thymus	Thymus

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