Variant report

Variant	rs10992754
Chromosome Location	chr9:96245687-96245688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96244628..96248113-chr9:96249700..96253077,4	MCF-7	breast:
2	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
3	chr9:96244084..96246142-chr9:96251969..96254302,2	K562	blood:
4	chr9:96240211..96242392-chr9:96243662..96246042,2	MCF-7	breast:
5	chr9:96235140..96238887-chr9:96245460..96248852,5	K562	blood:
6	chr9:96230020..96231557-chr9:96243930..96246449,2	MCF-7	breast:
7	chr9:96234181..96236763-chr9:96245089..96247624,3	K562	blood:
8	chr9:96239024..96241783-chr9:96243346..96246055,2	K562	blood:
9	chr9:96244925..96246887-chr9:96262831..96264712,2	K562	blood:

No data

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10512223	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055710	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739950	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761227	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761228	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761231	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761232	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761233	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761235	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821128	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821129	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821132	0.86[EUR][1000 genomes]
rs10821134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821137	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821140	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821141	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821142	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821145	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821146	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821147	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821148	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821150	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821151	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821152	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821153	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821154	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821157	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821158	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821159	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821160	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821163	0.83[AMR][1000 genomes]
rs10992729	0.87[EUR][1000 genomes]
rs10992746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992749	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992756	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992757	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992759	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992768	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992770	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992772	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992779	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992780	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992781	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs11790060	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790449	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11791374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376738	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12377399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377707	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12379660	0.87[EUR][1000 genomes]
rs12380167	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13285064	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1412050	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909199	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2150749	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183760	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297376	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34866682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34883241	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36016074	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813387	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813388	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307405	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743923	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743924	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743928	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744240	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744247	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744249	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744250	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744253	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744254	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs564	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864396	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7869969	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882851	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
4	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
5	chr9:96231600-96256400	Weak transcription	NH-A	brain
6	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:96233600-96246400	Weak transcription	Gastric	stomach
14	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
16	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
21	chr9:96236000-96246400	Weak transcription	Ovary	ovary
22	chr9:96238200-96248600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:96238400-96246000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:96238400-96246400	Weak transcription	NHLF	lung
25	chr9:96238400-96252800	Strong transcription	Placenta	Placenta
26	chr9:96238400-96258400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:96238800-96246400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:96238800-96246400	Weak transcription	HSMM	muscle
29	chr9:96238800-96256400	Weak transcription	Fetal Kidney	kidney
30	chr9:96239400-96246400	Weak transcription	Brain Anterior Caudate	brain
31	chr9:96239400-96251800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:96239600-96263200	Weak transcription	Small Intestine	intestine
33	chr9:96240000-96245800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:96240000-96246200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:96240000-96249800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:96240200-96255800	Weak transcription	Fetal Brain Female	brain
37	chr9:96241200-96246000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:96241200-96246400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:96241600-96262400	Strong transcription	Fetal Thymus	thymus
40	chr9:96241800-96247800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr9:96241800-96259800	Strong transcription	Dnd41	blood
42	chr9:96242000-96248000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr9:96242200-96246400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:96242200-96248600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr9:96242400-96246400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:96242400-96246400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:96242400-96246400	Weak transcription	HSMMtube	muscle
48	chr9:96242400-96248000	Strong transcription	Liver	Liver
49	chr9:96242400-96248600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:96242600-96246200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links