Variant report

Variant	rs10821137
Chromosome Location	chr9:96241033-96241034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96239164..96241265-chr9:96338853..96341666,2	K562	blood:
2	chr9:96235019..96236659-chr9:96239668..96242466,2	K562	blood:
3	chr9:96239972..96242150-chr9:96326116..96327649,2	MCF-7	breast:
4	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
5	chr9:96211777..96216293-chr9:96240145..96244458,5	MCF-7	breast:
6	chr9:96239024..96243784-chr9:96244555..96247463,4	K562	blood:
7	chr9:96240211..96242392-chr9:96243662..96246042,2	MCF-7	breast:
8	chr9:96239024..96241783-chr9:96243346..96246055,2	K562	blood:
9	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10512223	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1055710	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739950	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761227	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761228	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761229	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761230	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761231	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761232	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761233	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761235	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821128	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821129	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821130	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821132	0.86[EUR][1000 genomes]
rs10821134	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821136	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821138	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821139	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821140	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821141	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821142	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821143	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821145	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821146	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821147	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821148	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821150	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821151	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821152	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821153	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821154	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821157	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821158	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821159	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821160	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821163	0.82[AMR][1000 genomes]
rs10992729	0.87[EUR][1000 genomes]
rs10992746	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992748	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992749	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992751	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992754	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992756	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992757	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992759	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992768	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992770	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992772	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992779	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992780	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992781	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992790	0.83[AMR][1000 genomes]
rs11790060	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790449	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11791374	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376738	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12377399	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12377707	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12379660	0.87[EUR][1000 genomes]
rs12380167	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13285064	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1412050	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909199	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2150749	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2183760	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297376	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34866682	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34883241	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36016074	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813387	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3813388	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307405	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4743922	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743923	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743924	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743928	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744240	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744242	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744246	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744247	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744249	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4744250	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744253	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744254	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs564	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864396	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7869969	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882851	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96230000-96242200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
4	chr9:96231600-96242000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:96231600-96242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:96231600-96242200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:96231600-96242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96231600-96242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:96231600-96242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96231600-96242600	Weak transcription	Lung	lung
11	chr9:96231600-96242600	Weak transcription	Right Atrium	heart
12	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
14	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
15	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
16	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
17	chr9:96231600-96256400	Weak transcription	NH-A	brain
18	chr9:96231800-96242000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:96231800-96242200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:96231800-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:96232400-96242200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:96232600-96241800	Weak transcription	Adipose Nuclei	Adipose
27	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr9:96232800-96242000	Weak transcription	Right Ventricle	heart
29	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr9:96233400-96242200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:96233400-96242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:96233600-96242200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:96233600-96243000	Weak transcription	Left Ventricle	heart
35	chr9:96233600-96245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:96233600-96246400	Weak transcription	Gastric	stomach
38	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr9:96233800-96244800	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:96233800-96245000	Weak transcription	Brain Substantia Nigra	brain
41	chr9:96233800-96258400	Weak transcription	Colonic Mucosa	Colon
42	chr9:96233800-96258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:96234000-96250000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:96234000-96254000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:96234200-96241800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:96234400-96243400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:96234400-96259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:96235800-96241200	Strong transcription	Primary hematopoietic stem cells	blood
49	chr9:96235800-96253600	Weak transcription	Stomach Mucosa	stomach
50	chr9:96236000-96242600	Weak transcription	Psoas Muscle	Psoas

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