Variant report

Variant	rs10821129
Chromosome Location	chr9:96222617-96222618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
2	chr9:96220469..96222711-chr9:96337665..96339518,2	MCF-7	breast:
3	chr9:96221028..96223549-chr9:96326289..96328880,2	MCF-7	breast:
4	chr9:96087344..96090243-chr9:96221738..96224312,2	MCF-7	breast:
5	chr9:96222124..96223633-chr9:96240798..96243259,2	K562	blood:
6	chr9:96222346..96224759-chr9:96335297..96339322,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10512223	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1055710	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739950	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761228	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761229	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761230	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761231	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761232	0.87[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761233	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10761235	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821128	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821132	0.91[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs10821134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821137	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821138	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821139	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821140	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821141	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821142	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821143	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821145	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821146	0.82[CEU][hapmap];0.96[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821147	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821148	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821150	0.91[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821151	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821152	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821153	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821154	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821157	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821158	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821159	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs10821160	1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10821163	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs10992729	0.91[EUR][1000 genomes]
rs10992746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992748	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992749	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992754	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992756	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992757	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992759	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992768	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992769	1.00[YRI][hapmap]
rs10992770	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992772	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992779	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992780	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992781	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992790	0.84[AMR][1000 genomes]
rs11790060	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11790449	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11791374	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12376738	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12377399	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12377707	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12379660	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes]
rs12380167	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13285064	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1412050	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556416	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16909199	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2150749	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2183760	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297376	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34866682	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34883241	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36016074	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813387	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3813388	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4307405	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743922	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743923	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743924	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743928	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744240	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744242	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744246	0.91[AMR][1000 genomes]
rs4744247	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744249	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744250	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744253	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744254	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs564	0.86[AMR][1000 genomes]
rs7864396	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs7869969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882851	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
9	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
10	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
12	chr9:96217400-96222800	Weak transcription	Thymus	Thymus
13	chr9:96217400-96223200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:96217400-96230800	Weak transcription	HSMM	muscle
16	chr9:96217600-96223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
19	chr9:96218400-96223600	Enhancers	Small Intestine	intestine
20	chr9:96218600-96223600	Enhancers	Stomach Mucosa	stomach
21	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
22	chr9:96219200-96229000	Weak transcription	NH-A	brain
23	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:96219400-96223400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr9:96219400-96225800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:96219400-96226000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:96220000-96223400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:96220000-96223600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr9:96220200-96225000	Enhancers	Colonic Mucosa	Colon
30	chr9:96220400-96223200	Enhancers	Left Ventricle	heart
31	chr9:96220400-96223400	Enhancers	Psoas Muscle	Psoas
32	chr9:96220400-96223600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:96220400-96223600	Enhancers	Spleen	Spleen
34	chr9:96220400-96223800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:96220600-96223200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:96220600-96223400	Enhancers	Right Atrium	heart
37	chr9:96220600-96223800	Enhancers	Fetal Heart	heart
38	chr9:96220600-96226600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:96220800-96223000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr9:96220800-96223000	Weak transcription	Fetal Kidney	kidney
41	chr9:96220800-96226200	Enhancers	A549	lung
42	chr9:96220800-96227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr9:96221000-96223600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:96221000-96223800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96221000-96223800	Enhancers	Fetal Thymus	thymus
47	chr9:96221200-96223000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:96221200-96225400	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:96221200-96225600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:96221200-96228200	Weak transcription	Aorta	Aorta

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