Variant report

Variant	rs13292712
Chromosome Location	chr9:96296720-96296721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96208752..96211539-chr9:96294912..96297639,2	MCF-7	breast:
2	chr9:96212803..96214368-chr9:96294888..96297654,2	MCF-7	breast:
3	chr9:96213195..96214730-chr9:96295908..96298704,2	K562	blood:
4	chr9:96290471..96293694-chr9:96293846..96296779,3	MCF-7	breast:
5	chr9:96283725..96286210-chr9:96295054..96296759,2	MCF-7	breast:
6	chr9:96213805..96216467-chr9:96293601..96296819,4	MCF-7	breast:
7	chr9:96295942..96297811-chr9:96304126..96306733,2	K562	blood:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10115234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512225	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10761226	0.85[ASN][1000 genomes]
rs10761234	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761237	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821126	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821127	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821131	0.89[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes]
rs10821135	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821144	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821162	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821166	0.85[CEU][hapmap]
rs10992731	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992788	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992789	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11789176	0.89[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs12554020	0.83[YRI][hapmap]
rs3901421	0.89[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3933795	0.88[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4237221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4310267	0.82[AMR][1000 genomes]
rs4607675	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743927	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744243	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744245	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61707921	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62574545	0.90[ASN][1000 genomes]
rs6479484	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479485	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7019001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021689	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7023212	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7023577	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7035504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040832	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs883782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952288	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966789	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13292712	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
9	chr9:96279000-96297400	Strong transcription	HepG2	liver
10	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
11	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
14	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
20	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
21	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:96285000-96298800	Strong transcription	A549	lung
26	chr9:96285000-96301400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:96285000-96304000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:96285000-96327000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:96285000-96327000	Strong transcription	Dnd41	blood
30	chr9:96285200-96299600	Strong transcription	Fetal Intestine Large	intestine
31	chr9:96285200-96299600	Strong transcription	Thymus	Thymus
32	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:96285400-96297800	Strong transcription	Colonic Mucosa	Colon
34	chr9:96285400-96299800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr9:96285400-96304200	Strong transcription	HSMM	muscle
36	chr9:96285400-96327800	Strong transcription	Liver	Liver
37	chr9:96285600-96297600	Strong transcription	NHEK	skin
38	chr9:96285600-96301000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:96285600-96310000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:96285800-96298600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr9:96285800-96298600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:96285800-96298800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:96285800-96303400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:96286000-96299400	Strong transcription	Fetal Thymus	thymus
45	chr9:96286000-96301200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:96286000-96302800	Strong transcription	Osteobl	bone
47	chr9:96286000-96304000	Strong transcription	Adipose Nuclei	Adipose
48	chr9:96287200-96299000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:96287200-96303800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:96288200-96297400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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