Variant report

Variant	rs4607675
Chromosome Location	chr9:96216409-96216410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr9:96215134-96216730	Hela-S3	cervix:	n/a	n/a
2	BRCA1	chr9:96215680-96216425	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr9:96214286-96217706	GM12891	blood:	n/a	n/a
4	ELF1	chr9:96215542-96216421	MCF-7	breast:	n/a	n/a
5	POLR2A	chr9:96212689-96216511	MCF10A-Er-Src	breast:	n/a	n/a
6	ARID3A	chr9:96215431-96216541	K562	blood:	n/a	n/a
7	MXI1	chr9:96212638-96216476	GM12878	blood:	n/a	n/a
8	SIN3AK20	chr9:96214120-96216442	MCF-7	breast:	n/a	n/a
9	MXI1	chr9:96212503-96216904	SK-N-SH	brain:	n/a	n/a
10	GABPA	chr9:96215240-96216417	A549	lung:	n/a	n/a
11	POLR2A	chr9:96214909-96216844	K562	blood:	n/a	n/a
12	CHD1	chr9:96214278-96216476	GM12878	blood:	n/a	n/a
13	POLR2A	chr9:96213106-96216418	GM18505	blood:	n/a	n/a
14	POLR2A	chr9:96214810-96216457	PBDE	blood:	n/a	n/a
15	POLR2A	chr9:96212674-96216572	GM12878	blood:	n/a	n/a
16	SPI1	chr9:96215473-96216456	GM12878	blood:	n/a	chr9:96216006-96216019 chr9:96216009-96216016 chr9:96215868-96215881
17	TBL1XR1	chr9:96215323-96216414	K562	blood:	n/a	n/a
18	GABPA	chr9:96215066-96216568	MCF-7	breast:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96216144..96218781-chr9:96233420..96235999,2	K562	blood:
2	chr6:56817242..56820030-chr9:96215701..96218251,2	MCF-7	breast:
3	chr9:96212024..96217170-chr9:96326121..96330116,7	MCF-7	breast:
4	chr9:96213805..96216467-chr9:96293601..96296819,4	MCF-7	breast:
5	chr9:95895534..95897628-chr9:96214404..96216660,2	MCF-7	breast:
6	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
7	chr9:96072987..96083429-chr9:96209751..96218385,15	MCF-7	breast:
8	chr9:96214499..96217099-chr9:96338317..96340265,2	K562	blood:
9	chr9:95870093..95872225-chr9:96214291..96216786,2	K562	blood:
10	chr9:95858239..95860012-chr9:96214576..96216562,2	MCF-7	breast:
11	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
12	chr9:96211672..96218862-chr9:96335264..96341672,16	MCF-7	breast:
13	chr9:95763664..95766138-chr9:96216197..96217836,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM120AOS	TF binding region
ENSG00000165233	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000263875	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000151914	Chromatin interaction
ENSG00000151917	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10115234	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10512225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10761226	0.99[ASN][1000 genomes]
rs10761234	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761237	0.86[AMR][1000 genomes]
rs10821126	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821127	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821131	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821135	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821144	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821155	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821162	0.87[AMR][1000 genomes]
rs10992731	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992788	0.87[AMR][1000 genomes]
rs10992789	0.87[AMR][1000 genomes]
rs11789176	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13292712	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3901421	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924389	0.81[ASN][1000 genomes]
rs3933795	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237221	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4310267	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743927	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744243	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61707921	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62574545	0.89[ASN][1000 genomes]
rs6479484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479487	0.96[YRI][hapmap]
rs6479492	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479493	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7019001	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7021689	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7023212	0.87[AMR][1000 genomes]
rs7023577	0.86[AMR][1000 genomes]
rs7035504	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7040832	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs883782	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs883784	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs952288	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs966789	0.86[CEU][hapmap];0.87[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4607675	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96212400-96216600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr9:96212400-96216800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:96212400-96216800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr9:96212400-96217000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:96212400-96217000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:96212600-96216600	Active TSS	H9 Cell Line	embryonic stem cell
7	chr9:96212600-96216600	Active TSS	Sigmoid Colon	Sigmoid Colon
8	chr9:96212600-96217000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:96212600-96217200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr9:96212600-96218400	Active TSS	GM12878-XiMat	blood
11	chr9:96212800-96216600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr9:96212800-96216600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:96212800-96216600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:96212800-96216600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:96212800-96216600	Active TSS	Psoas Muscle	Psoas
16	chr9:96212800-96216600	Active TSS	K562	blood
17	chr9:96212800-96216800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr9:96213000-96216600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:96213000-96216600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:96213000-96216600	Active TSS	Colonic Mucosa	Colon
21	chr9:96213000-96216600	Active TSS	Right Ventricle	heart
22	chr9:96213000-96216600	Active TSS	NHEK	skin
23	chr9:96213000-96216800	Active TSS	Left Ventricle	heart
24	chr9:96213000-96216800	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:96213000-96216800	Active TSS	HSMMtube	muscle
26	chr9:96213200-96216600	Active TSS	Fetal Thymus	thymus
27	chr9:96213600-96216600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:96214400-96216600	Active TSS	Stomach Mucosa	stomach
29	chr9:96214400-96216800	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr9:96214600-96216600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr9:96214800-96216800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr9:96214800-96216800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:96214800-96217400	Active TSS	Right Atrium	heart
34	chr9:96215000-96216600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:96215400-96216600	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr9:96215400-96217000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr9:96216000-96216600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr9:96216000-96216800	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr9:96216000-96216800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr9:96216000-96216800	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr9:96216000-96217000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:96216000-96217000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr9:96216000-96217000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr9:96216200-96216600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr9:96216200-96216600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr9:96216200-96216600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr9:96216200-96216600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr9:96216200-96216600	Flanking Active TSS	Brain Cingulate Gyrus	brain
49	chr9:96216200-96216600	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr9:96216200-96216600	Flanking Active TSS	Colon Smooth Muscle	Colon

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