Variant report

Variant	rs10512225
Chromosome Location	chr9:96227100-96227101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96223838..96225399-chr9:96225606..96227338,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:
4	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
5	chr9:96224023..96227190-chr9:96336323..96339584,4	MCF-7	breast:
6	chr9:96226992..96229421-chr9:96235816..96238058,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10115234	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs10761226	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761234	0.85[ASN][1000 genomes]
rs10821126	0.88[ASN][1000 genomes]
rs10821127	0.90[ASN][1000 genomes]
rs10821131	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10821135	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10821144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10821155	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10992731	0.88[ASN][1000 genomes]
rs10992783	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11789176	0.86[JPT][hapmap]
rs13292712	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs3901421	0.82[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs3924389	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3933795	0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4237221	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4310267	0.85[ASN][1000 genomes]
rs4607675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4743927	0.85[ASN][1000 genomes]
rs4744243	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4744245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs61707921	0.98[ASN][1000 genomes]
rs62574545	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6479484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs6479485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6479492	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6479493	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7019001	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7023577	0.82[MEX][hapmap]
rs7035504	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7040832	0.88[ASN][1000 genomes]
rs883782	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs883784	0.83[ASN][1000 genomes]
rs952288	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10512225	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL
rs10512225	ANKRD19	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
6	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
7	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
8	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:96217400-96230800	Weak transcription	HSMM	muscle
10	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
11	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
12	chr9:96219200-96229000	Weak transcription	NH-A	brain
13	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:96221200-96228200	Weak transcription	Aorta	Aorta
16	chr9:96221200-96229000	Weak transcription	Osteobl	bone
17	chr9:96221400-96228000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:96221600-96227200	Weak transcription	Gastric	stomach
19	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:96222000-96228000	Weak transcription	Brain Angular Gyrus	brain
21	chr9:96222000-96228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:96222000-96228600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:96222200-96227200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:96222200-96227200	Weak transcription	Adipose Nuclei	Adipose
25	chr9:96222200-96227400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:96222200-96228000	Weak transcription	Esophagus	oesophagus
27	chr9:96222200-96228000	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:96222200-96228000	Weak transcription	Ovary	ovary
29	chr9:96222200-96228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:96222200-96228200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:96222200-96228800	Weak transcription	NHLF	lung
32	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
35	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr9:96223000-96228000	Weak transcription	Lung	lung
37	chr9:96223200-96227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:96223400-96227800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:96223400-96228000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:96223600-96227200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr9:96223600-96228000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:96223600-96228000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:96223600-96228000	Weak transcription	Spleen	Spleen
44	chr9:96223600-96228600	Weak transcription	Hela-S3	cervix
45	chr9:96223800-96228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:96223800-96228200	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr9:96223800-96228200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:96223800-96228800	Weak transcription	NHDF-Ad	bronchial
49	chr9:96224400-96229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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