Variant report

Variant	rs10821135
Chromosome Location	chr9:96238578-96238579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96233392..96236204-chr9:96237151..96240894,5	MCF-7	breast:
2	chr9:96211493..96214921-chr9:96237278..96239968,3	K562	blood:
3	chr9:96235140..96238887-chr9:96245460..96248852,5	K562	blood:
4	chr9:96213857..96217592-chr9:96236094..96239069,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10115234	0.81[ASW][hapmap];0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512225	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10761226	0.98[ASN][1000 genomes]
rs10761234	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10761237	0.85[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes]
rs10821126	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821127	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821131	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821144	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821155	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821162	0.93[AMR][1000 genomes]
rs10992731	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992788	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992789	0.93[AMR][1000 genomes]
rs11789176	0.92[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13292712	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3901421	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3924389	0.81[ASN][1000 genomes]
rs3933795	0.92[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237221	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4310267	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4607675	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743927	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61707921	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62574545	0.93[ASN][1000 genomes]
rs6479484	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479485	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479492	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479493	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7019001	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7021689	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7023212	0.85[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes]
rs7023577	0.81[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes]
rs7035504	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7040832	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs883782	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883784	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952288	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966789	0.93[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10821135	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL
rs10821135	ANKRD19	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
2	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
3	chr9:96230000-96242200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
5	chr9:96231600-96240600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:96231600-96242000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:96231600-96242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96231600-96242200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:96231600-96242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:96231600-96242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:96231600-96242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:96231600-96242600	Weak transcription	Lung	lung
13	chr9:96231600-96242600	Weak transcription	Right Atrium	heart
14	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
16	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
17	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
18	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
19	chr9:96231600-96256400	Weak transcription	NH-A	brain
20	chr9:96231800-96242000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:96231800-96242200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:96231800-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:96232400-96242200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:96232600-96240000	Strong transcription	Dnd41	blood
29	chr9:96232600-96241800	Weak transcription	Adipose Nuclei	Adipose
30	chr9:96232600-96251800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr9:96232800-96242000	Weak transcription	Right Ventricle	heart
32	chr9:96232800-96262600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr9:96233200-96238800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:96233200-96240800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:96233400-96240800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr9:96233400-96242200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:96233400-96242800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:96233400-96248000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:96233600-96242200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr9:96233600-96243000	Weak transcription	Left Ventricle	heart
41	chr9:96233600-96245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:96233600-96246400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr9:96233600-96246400	Weak transcription	Gastric	stomach
44	chr9:96233600-96248600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:96233800-96238800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:96233800-96239200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:96233800-96239200	Weak transcription	Small Intestine	intestine
48	chr9:96233800-96239800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:96233800-96244800	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:96233800-96245000	Weak transcription	Brain Substantia Nigra	brain

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