Variant report

Variant	rs10992731
Chromosome Location	chr9:96199098-96199099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96197328..96199398-chr9:96213169..96215579,3	K562	blood:
2	chr9:96196696..96199442-chr9:96211213..96213936,2	K562	blood:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115234	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10512225	0.88[ASN][1000 genomes]
rs10761226	0.88[ASN][1000 genomes]
rs10761234	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821126	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821127	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821131	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821135	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821144	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821155	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11789176	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13292712	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3901421	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3933795	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4237221	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4310267	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4607675	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4743927	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744243	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744245	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61707921	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62574545	0.82[ASN][1000 genomes]
rs6479484	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479485	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479492	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479493	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7019001	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7021689	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7035504	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7040832	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883782	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs883784	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs952288	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs966789	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992731	FAM120AOS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
5	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood
6	chr9:96194400-96208000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:96194400-96208000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:96194400-96208400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:96194400-96208400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:96194400-96208400	Weak transcription	Small Intestine	intestine
11	chr9:96194400-96208800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:96194400-96209200	Weak transcription	Fetal Kidney	kidney
13	chr9:96194600-96208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:96195400-96208200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:96195400-96208200	Weak transcription	Left Ventricle	heart
16	chr9:96195600-96207800	Weak transcription	GM12878-XiMat	blood
17	chr9:96195600-96208400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:96196800-96208400	Weak transcription	Fetal Lung	lung
19	chr9:96196800-96209600	Weak transcription	Psoas Muscle	Psoas
20	chr9:96197000-96208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:96197000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:96197200-96207800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:96197400-96208200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:96197400-96208800	Weak transcription	Colonic Mucosa	Colon
25	chr9:96197600-96207600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:96197800-96207800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:96197800-96209000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:96197800-96209200	Weak transcription	Brain Angular Gyrus	brain
29	chr9:96198000-96199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:96198000-96208000	Weak transcription	Primary B cells from cord blood	blood
31	chr9:96198000-96208200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:96198000-96212600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:96198200-96207600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:96198200-96208200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:96198400-96199400	Weak transcription	Placenta	Placenta
36	chr9:96198400-96208200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:96198600-96208000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:96198800-96199200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:96198800-96202000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr9:96198800-96209000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:96199000-96199400	Weak transcription	Aorta	Aorta
42	chr9:96199000-96199600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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