Variant report

Variant	rs72744063
Chromosome Location	chr1:193601041-193601042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12025400	0.98[EUR][1000 genomes]
rs12064935	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12073207	0.95[EUR][1000 genomes]
rs12082580	0.95[EUR][1000 genomes]
rs12084728	0.98[EUR][1000 genomes]
rs12086172	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1339307	0.98[EUR][1000 genomes]
rs1416601	0.83[EUR][1000 genomes]
rs1578120	0.98[EUR][1000 genomes]
rs16835629	0.98[EUR][1000 genomes]
rs16835631	0.92[EUR][1000 genomes]
rs1967827	0.84[EUR][1000 genomes]
rs34164974	0.87[EUR][1000 genomes]
rs72728904	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72744046	0.98[EUR][1000 genomes]
rs72744048	0.98[EUR][1000 genomes]
rs72744061	1.00[EUR][1000 genomes]
rs72744067	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72744069	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7524732	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7551855	0.91[EUR][1000 genomes]
rs9628684	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193586200-193603200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:193596800-193603800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:193598600-193601800	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:193599400-193603400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:193599600-193602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:193600200-193603400	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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