Variant report

Variant	rs72744067
Chromosome Location	chr1:193604198-193604199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12025400	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12064935	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12073207	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12082580	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12084728	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12086172	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416601	0.86[EUR][1000 genomes]
rs1578120	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16835629	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16835631	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1967827	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34164974	0.89[EUR][1000 genomes]
rs72728904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744046	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72744048	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72744061	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744063	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72744069	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524732	0.85[EUR][1000 genomes]
rs7551855	0.93[EUR][1000 genomes]
rs9628684	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193603200-193604200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:193603200-193604400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:193603400-193604200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:193603400-193604400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:193603400-193605000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:193603600-193604200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:193603600-193604200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:193603800-193604200	Enhancers	Fetal Kidney	kidney

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