Variant report

Variant	rs72744915
Chromosome Location	chr15:56830029-56830030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28510121	0.85[EUR][1000 genomes]
rs28539999	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28877384	0.82[EUR][1000 genomes]
rs72744943	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv498847	chr15:56667038-56896395	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2525559	chr15:56669294-56897412	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv433294	chr15:56676457-56853535	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3693203	chr15:56676457-56894478	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv35150	chr15:56677730-56896304	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1047100	chr15:56783225-56840744	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv9271	chr15:56789721-56831555	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1049240	chr15:56820899-56890478	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56822000-56832200	Enhancers	Fetal Thymus	thymus
2	chr15:56824800-56830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:56825800-56830200	Weak transcription	HSMM	muscle
4	chr15:56826400-56830200	Weak transcription	Primary B cells from cord blood	blood
5	chr15:56826600-56830200	Weak transcription	HSMMtube	muscle
6	chr15:56829200-56830600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:56829200-56831800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:56829200-56831800	Enhancers	Fetal Muscle Leg	muscle
9	chr15:56829200-56832000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:56829400-56830600	Enhancers	Brain Hippocampus Middle	brain
11	chr15:56829400-56831400	Enhancers	Primary T cells from cord blood	blood
12	chr15:56829600-56830800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:56829800-56830200	Flanking Active TSS	Thymus	Thymus
14	chr15:56829800-56830400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr15:56829800-56830400	Enhancers	Brain Cingulate Gyrus	brain
16	chr15:56829800-56830600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:56829800-56830600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:56829800-56830800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr15:56830000-56830400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr15:56830000-56830600	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:56830000-56832600	Enhancers	Dnd41	blood

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