Variant report

Variant	rs72745060
Chromosome Location	chr9:86041017-86041018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11792493	1.00[ASN][1000 genomes]
rs11794438	1.00[ASN][1000 genomes]
rs12005369	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860915	1.00[ASN][1000 genomes]
rs55938439	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56658338	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60152061	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60329197	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039388	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745036	1.00[ASN][1000 genomes]
rs72745047	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745080	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745084	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745087	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745090	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745099	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
2	chr9:86035400-86041400	Weak transcription	Psoas Muscle	Psoas
3	chr9:86036800-86041200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:86037800-86047200	Weak transcription	Fetal Stomach	stomach
5	chr9:86038000-86041400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:86038400-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:86038400-86046600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:86038600-86041400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:86039200-86041200	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:86039200-86041200	Weak transcription	Gastric	stomach
11	chr9:86039200-86041200	Weak transcription	Right Atrium	heart
12	chr9:86039200-86041400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:86039600-86041200	Enhancers	HepG2	liver
15	chr9:86039600-86041400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:86040000-86045800	Weak transcription	Fetal Lung	lung
17	chr9:86040000-86045800	Weak transcription	Small Intestine	intestine
18	chr9:86040000-86046000	Weak transcription	Fetal Heart	heart
19	chr9:86040200-86046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:86040400-86041400	Weak transcription	Pancreas	Pancrea
21	chr9:86040400-86045800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:86040400-86050000	Weak transcription	Fetal Intestine Large	intestine
23	chr9:86040800-86042400	Enhancers	Left Ventricle	heart
24	chr9:86041000-86041800	Enhancers	Ovary	ovary
25	chr9:86041000-86041800	Enhancers	Spleen	Spleen
26	chr9:86041000-86042200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr9:86041000-86042200	Enhancers	Aorta	Aorta
28	chr9:86041000-86042400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:86041000-86042400	Enhancers	Adipose Nuclei	Adipose
30	chr9:86041000-86042400	Enhancers	Monocytes-CD14+_RO01746	blood

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