Variant report

Variant	rs72745080
Chromosome Location	chr9:86048138-86048139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86046084..86048921-chr9:86138267..86141242,2	MCF-7	breast:
2	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10868013	0.80[EUR][1000 genomes]
rs11792493	1.00[ASN][1000 genomes]
rs11794438	1.00[ASN][1000 genomes]
rs12005369	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860915	1.00[ASN][1000 genomes]
rs55938439	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56658338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60152061	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60329197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039388	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745036	1.00[ASN][1000 genomes]
rs72745047	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745060	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745084	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745087	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745090	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745099	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86040400-86050000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:86045600-86048200	Enhancers	Liver	Liver
4	chr9:86045800-86048200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:86046200-86048600	Weak transcription	Gastric	stomach
6	chr9:86046600-86050800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:86047200-86052200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:86047400-86048600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:86047400-86049200	Weak transcription	Right Ventricle	heart
10	chr9:86047400-86049200	Weak transcription	Stomach Mucosa	stomach
11	chr9:86047400-86050400	Enhancers	HepG2	liver
12	chr9:86047400-86052600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
15	chr9:86047600-86048600	Weak transcription	Adipose Nuclei	Adipose
16	chr9:86047600-86048600	Weak transcription	Left Ventricle	heart
17	chr9:86047600-86048600	Weak transcription	Lung	lung
18	chr9:86047600-86048600	Weak transcription	Psoas Muscle	Psoas
19	chr9:86047600-86048600	Weak transcription	Right Atrium	heart
20	chr9:86047600-86048600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:86047600-86048600	Weak transcription	Spleen	Spleen
22	chr9:86047600-86048800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:86047600-86049000	Weak transcription	Colonic Mucosa	Colon
24	chr9:86047600-86049400	Enhancers	Hela-S3	cervix
25	chr9:86047600-86051200	Weak transcription	Fetal Heart	heart
26	chr9:86047600-86052400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:86047600-86053800	Weak transcription	Aorta	Aorta
28	chr9:86047600-86055800	Weak transcription	Esophagus	oesophagus
29	chr9:86047600-86055800	Weak transcription	Ovary	ovary
30	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:86048000-86048200	Enhancers	A549	lung
33	chr9:86048000-86048400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr9:86048000-86049400	Enhancers	Pancreas	Pancrea
35	chr9:86048000-86050600	Enhancers	Primary neutrophils fromperipheralblood	blood

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