Variant report

Variant	rs72748118
Chromosome Location	chr9:118125373-118125374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs41308904	0.87[EUR][1000 genomes]
rs55806800	1.00[AFR][1000 genomes]
rs56329333	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72748108	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72748116	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72748121	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72748129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72748138	1.00[AFR][1000 genomes]
rs72748141	1.00[AFR][1000 genomes]
rs72748202	0.87[EUR][1000 genomes]
rs72750103	0.87[EUR][1000 genomes]
rs72750105	0.87[EUR][1000 genomes]
rs72750106	0.87[EUR][1000 genomes]
rs72750109	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72757309	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118119400-118128600	Weak transcription	Fetal Intestine Small	intestine
2	chr9:118119600-118135800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:118122600-118128200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:118122600-118129400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:118122600-118130800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:118124400-118125400	Enhancers	Fetal Kidney	kidney
7	chr9:118124800-118125600	Enhancers	Fetal Stomach	stomach
8	chr9:118124800-118131200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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