Variant report

Variant	rs72748141
Chromosome Location	chr9:118159315-118159316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs41308904	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55806800	1.00[AFR][1000 genomes]
rs56329333	0.87[EUR][1000 genomes]
rs72748108	1.00[AFR][1000 genomes]
rs72748118	1.00[AFR][1000 genomes]
rs72748129	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72748138	1.00[AFR][1000 genomes]
rs72748202	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72750103	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72750105	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72750106	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72750109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72757309	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2761245	chr9:118157164-118171298	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv519995	chr9:118157729-118163797	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118154600-118161800	Weak transcription	Fetal Kidney	kidney
2	chr9:118154800-118159800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:118155800-118159400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:118155800-118159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118157400-118162200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:118157600-118160600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:118158000-118160600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr9:118158600-118159400	Enhancers	Fetal Heart	heart
9	chr9:118158600-118159600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:118158800-118162600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:118158800-118163200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:118159000-118159800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:118159000-118160400	Weak transcription	Fetal Lung	lung
14	chr9:118159000-118160400	Weak transcription	NHDF-Ad	bronchial
15	chr9:118159000-118160600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr9:118159000-118161400	Weak transcription	Right Atrium	heart
17	chr9:118159000-118161600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:118159000-118170600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:118159200-118161200	Weak transcription	Osteobl	bone
20	chr9:118159200-118161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:118159200-118163000	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:118159200-118163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:118159200-118163200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:118159200-118163200	Weak transcription	NH-A	brain
25	chr9:118159200-118163800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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