Variant report

Variant	rs72748568
Chromosome Location	chr1:212106487-212106488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212071600..212073818-chr1:212104650..212107451,2	K562	blood:
2	chr1:212105969..212108114-chr1:212115797..212117969,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11119825	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119844	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12122247	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12122488	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12124877	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12125159	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12126761	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12127488	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12130548	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12131060	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12131750	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12132233	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12132812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12132954	0.86[ASN][1000 genomes]
rs12134529	0.87[AFR][1000 genomes]
rs12135924	0.87[AFR][1000 genomes]
rs12138302	0.87[AFR][1000 genomes]
rs12144471	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12145020	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12567425	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12723988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724564	0.87[AFR][1000 genomes]
rs12744135	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12747761	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12749452	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12750872	0.91[AMR][1000 genomes]
rs12755278	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12759730	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17018334	0.83[ASN][1000 genomes]
rs1965955	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34192465	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34841259	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35325760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795836	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71646137	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750369	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212100600-212109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:212101400-212107800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:212102000-212109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:212102400-212107800	Weak transcription	Spleen	Spleen
6	chr1:212102400-212113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:212102600-212115200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:212102600-212120400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:212102800-212111400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:212102800-212114400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:212102800-212115000	Weak transcription	Fetal Thymus	thymus
12	chr1:212102800-212115200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:212103000-212107800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:212103000-212132600	Weak transcription	Gastric	stomach
15	chr1:212103200-212107800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:212103200-212108600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:212103200-212115000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:212103200-212115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:212103200-212115200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:212103200-212115200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:212103400-212111600	Weak transcription	Liver	Liver
22	chr1:212103400-212113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:212103400-212113200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:212103600-212111800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:212103600-212111800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:212103600-212115000	Weak transcription	NHEK	skin
27	chr1:212103600-212115400	Weak transcription	HMEC	breast
28	chr1:212103600-212132200	Weak transcription	Esophagus	oesophagus
29	chr1:212103800-212132200	Weak transcription	NHLF	lung
30	chr1:212104000-212117600	Weak transcription	HepG2	liver
31	chr1:212104200-212115000	Weak transcription	Lung	lung
32	chr1:212104400-212108000	Enhancers	Fetal Muscle Trunk	muscle
33	chr1:212104600-212107800	Enhancers	GM12878-XiMat	blood
34	chr1:212104800-212107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:212104800-212109600	Weak transcription	Fetal Intestine Small	intestine
36	chr1:212104800-212114800	Weak transcription	Hela-S3	cervix
37	chr1:212104800-212124400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:212105400-212107000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr1:212105400-212109000	Enhancers	Fetal Heart	heart
40	chr1:212105400-212109200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:212105400-212109200	Enhancers	Fetal Muscle Leg	muscle
42	chr1:212105600-212106800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:212105600-212107000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:212105800-212106800	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr1:212105800-212107000	Enhancers	HSMM	muscle
46	chr1:212105800-212107000	Enhancers	HSMMtube	muscle
47	chr1:212106000-212106600	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr1:212106000-212106800	Enhancers	Adipose Nuclei	Adipose
49	chr1:212106000-212107000	Enhancers	Placenta	Placenta
50	chr1:212106000-212107000	Enhancers	Pancreas	Pancrea

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