Variant report

Variant	rs12135924
Chromosome Location	chr1:212090822-212090823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212090529..212093204-chr1:212208450..212210624,2	K562	blood:
2	chr1:212088917..212091243-chr1:212091462..212093769,2	K562	blood:
3	chr1:212089622..212092139-chr1:212102871..212105783,2	K562	blood:
4	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Variant related genes	Relation type
ENSG00000143493	Chromatin interaction
ENSG00000143476	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1065607	0.85[CEU][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs10863931	0.86[ASN][1000 genomes]
rs11119810	0.86[CHB][hapmap]
rs11119814	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs11119816	0.85[CEU][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs11119823	0.86[ASN][1000 genomes]
rs11119825	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11119826	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11119827	0.90[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12023263	0.81[MEX][hapmap]
rs12121773	0.81[MEX][hapmap];1.00[YRI][hapmap]
rs12122247	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[YRI][hapmap]
rs12122488	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12123135	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs12123274	1.00[YRI][hapmap]
rs12123889	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs12125042	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12125159	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12126561	0.81[MEX][hapmap]
rs12126761	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12129315	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs12130548	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12131060	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12132233	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12134529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136792	0.85[CEU][hapmap]
rs12138283	0.85[CEU][hapmap]
rs12138302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145020	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12145721	0.85[CEU][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs12562791	0.85[CEU][hapmap]
rs12564498	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12565318	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs12565546	0.85[CEU][hapmap]
rs12566620	0.85[CEU][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs12723988	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs12724564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12735358	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12747761	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs17018028	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17018048	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17018334	0.85[CHD][hapmap]
rs17042024	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]
rs2298095	0.94[GIH][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs28695463	0.80[ASN][1000 genomes]
rs2970580	0.85[ASN][1000 genomes]
rs35325760	0.87[AFR][1000 genomes]
rs3795836	0.90[CHB][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4132401	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs4364936	1.00[YRI][hapmap]
rs55794431	0.86[ASN][1000 genomes]
rs56160062	0.86[ASN][1000 genomes]
rs72746583	0.80[ASN][1000 genomes]
rs72748525	0.86[ASN][1000 genomes]
rs72748568	0.87[AFR][1000 genomes]
rs7526682	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
2	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
4	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
5	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
6	chr1:212089800-212093600	Enhancers	HepG2	liver
7	chr1:212089800-212093800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:212090000-212091800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:212090000-212093600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
11	chr1:212090400-212092000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr1:212090400-212092000	Flanking Active TSS	A549	lung
13	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:212090600-212092000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr1:212090600-212092200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:212090600-212093200	Enhancers	Liver	Liver
17	chr1:212090600-212093800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr1:212090600-212094400	Enhancers	Osteobl	bone
19	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:212090800-212091000	Enhancers	Esophagus	oesophagus
22	chr1:212090800-212091000	Enhancers	Small Intestine	intestine
23	chr1:212090800-212091000	Bivalent Enhancer	NHDF-Ad	bronchial
24	chr1:212090800-212092000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr1:212090800-212092200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:212090800-212092200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:212090800-212092200	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr1:212090800-212092600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:212090800-212093800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:212090800-212094400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:212090800-212094400	Enhancers	Pancreas	Pancrea
32	chr1:212090800-212094400	Enhancers	Stomach Mucosa	stomach
33	chr1:212090800-212094400	Enhancers	NHLF	lung
34	chr1:212090800-212094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose

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