Variant report

Variant	rs11119823
Chromosome Location	chr1:212062663-212062664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1065607	0.95[EUR][1000 genomes]
rs10863931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119812	0.92[EUR][1000 genomes]
rs11119814	0.95[EUR][1000 genomes]
rs11119816	0.95[EUR][1000 genomes]
rs1126968	0.92[EUR][1000 genomes]
rs12119787	0.92[EUR][1000 genomes]
rs12120603	0.95[EUR][1000 genomes]
rs12122086	0.95[EUR][1000 genomes]
rs12122929	0.92[EUR][1000 genomes]
rs12123135	0.95[EUR][1000 genomes]
rs12123189	0.95[EUR][1000 genomes]
rs12123889	0.92[EUR][1000 genomes]
rs12125042	0.95[EUR][1000 genomes]
rs12126667	0.95[EUR][1000 genomes]
rs12126742	0.95[EUR][1000 genomes]
rs12128147	0.95[EUR][1000 genomes]
rs12128221	0.92[EUR][1000 genomes]
rs12129315	0.95[EUR][1000 genomes]
rs12129362	0.95[EUR][1000 genomes]
rs12129627	0.92[EUR][1000 genomes]
rs12131727	0.93[EUR][1000 genomes]
rs12134302	0.95[EUR][1000 genomes]
rs12134529	0.86[ASN][1000 genomes]
rs12135924	0.86[ASN][1000 genomes]
rs12136792	0.95[EUR][1000 genomes]
rs12138188	0.95[EUR][1000 genomes]
rs12138283	0.93[EUR][1000 genomes]
rs12138302	0.81[ASN][1000 genomes]
rs12139254	0.93[EUR][1000 genomes]
rs12139319	0.95[EUR][1000 genomes]
rs12139336	0.92[EUR][1000 genomes]
rs12142878	0.95[EUR][1000 genomes]
rs12144072	0.92[EUR][1000 genomes]
rs12144745	0.92[EUR][1000 genomes]
rs12145346	0.92[EUR][1000 genomes]
rs12145721	0.95[EUR][1000 genomes]
rs12562791	0.95[EUR][1000 genomes]
rs12562933	0.89[EUR][1000 genomes]
rs12563633	0.95[EUR][1000 genomes]
rs12564498	0.95[EUR][1000 genomes]
rs12565318	0.95[EUR][1000 genomes]
rs12565546	0.95[EUR][1000 genomes]
rs12566620	0.92[EUR][1000 genomes]
rs12568179	0.95[EUR][1000 genomes]
rs12724564	0.81[ASN][1000 genomes]
rs17018028	0.92[EUR][1000 genomes]
rs17018048	0.90[EUR][1000 genomes]
rs17042024	0.92[EUR][1000 genomes]
rs2298095	0.92[EUR][1000 genomes]
rs28695463	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4132401	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4364936	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55648545	0.95[EUR][1000 genomes]
rs55687837	0.95[EUR][1000 genomes]
rs55794431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836176	0.95[EUR][1000 genomes]
rs55843903	0.92[EUR][1000 genomes]
rs56028546	0.95[EUR][1000 genomes]
rs56074728	0.95[EUR][1000 genomes]
rs56160062	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225609	0.92[EUR][1000 genomes]
rs56295475	0.92[EUR][1000 genomes]
rs56318540	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72746513	0.92[EUR][1000 genomes]
rs72746521	0.92[EUR][1000 genomes]
rs72746525	0.92[EUR][1000 genomes]
rs72746529	0.92[EUR][1000 genomes]
rs72746531	0.89[EUR][1000 genomes]
rs72746535	0.92[EUR][1000 genomes]
rs72746563	0.95[EUR][1000 genomes]
rs72746569	0.95[EUR][1000 genomes]
rs72746572	0.97[EUR][1000 genomes]
rs72746579	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72746583	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747044	0.90[EUR][1000 genomes]
rs72747049	0.92[EUR][1000 genomes]
rs72748518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72748525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212060000-212068600	Weak transcription	A549	lung
2	chr1:212061600-212063600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:212061800-212064400	Weak transcription	Liver	Liver
4	chr1:212061800-212065600	Weak transcription	Adipose Nuclei	Adipose
5	chr1:212062000-212064000	Weak transcription	HepG2	liver
6	chr1:212062200-212063200	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr1:212062400-212062800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr1:212062400-212062800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr1:212062400-212063200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr1:212062400-212063200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr1:212062400-212063200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:212062400-212063400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr1:212062400-212063400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr1:212062400-212063600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr1:212062600-212062800	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:212062600-212062800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:212062600-212062800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:212062600-212062800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:212062600-212063000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:212062600-212063000	Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr1:212062600-212063000	Active TSS	Fetal Brain Female	brain
22	chr1:212062600-212063000	Active TSS	Placenta	Placenta
23	chr1:212062600-212063200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:212062600-212063200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:212062600-212063200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:212062600-212063200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:212062600-212063200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:212062600-212063200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:212062600-212063200	Active TSS	Pancreas	Pancrea
30	chr1:212062600-212063400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:212062600-212063400	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr1:212062600-212063400	Active TSS	HUES6 Cell Line	embryonic stem cell

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