The 2.0 version of rSNPBase

Variant report

Variant rs12139319
Chromosome Location chr1:212000812-212000813
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211919200-212001200 Weak transcription Gastric stomach
2 chr1:211924000-212002400 Weak transcription NHLF lung
3 chr1:211939800-212002400 Weak transcription HSMMtube muscle
4 chr1:211947400-212002400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:211952200-212003000 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:211961200-212002200 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:211965800-212002200 Weak transcription Primary T cells from cord blood blood
8 chr1:211966400-212002400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:211971800-212002400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:211974000-212001200 Weak transcription Small Intestine intestine
11 chr1:211983000-212002400 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr1:211983200-212002400 Weak transcription Thymus Thymus
13 chr1:211984600-212002400 Weak transcription NH-A brain
14 chr1:211984800-212002000 Weak transcription HUVEC blood vessel
15 chr1:211984800-212002400 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:211986200-212001000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr1:211986200-212001000 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:211986200-212001000 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:211986200-212002400 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr1:211986200-212002800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:211986400-212001400 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:211986800-212001000 Weak transcription Hela-S3 cervix
23 chr1:211987200-212002400 Weak transcription HMEC breast
24 chr1:211987800-212001000 Weak transcription Psoas Muscle Psoas
25 chr1:211988200-212002400 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:211988400-212002000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:211988600-212002400 Weak transcription Stomach Smooth Muscle stomach
28 chr1:211989600-212002800 Weak transcription Lung lung
29 chr1:211991200-212001000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:211991200-212002600 Weak transcription Placenta Placenta
31 chr1:211992200-212002400 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:211993200-212001200 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:211993200-212002200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:211993400-212001000 Weak transcription Ovary ovary
35 chr1:211995000-212002800 Weak transcription Fetal Lung lung
36 chr1:211995600-212001200 Weak transcription K562 blood
37 chr1:211996400-212001200 Strong transcription Fetal Adrenal Gland Adrenal Gland
38 chr1:211997200-212002400 Weak transcription Fetal Kidney kidney
39 chr1:211997600-212001200 Weak transcription Right Atrium heart
40 chr1:211997800-212001200 Weak transcription Left Ventricle heart
41 chr1:211997800-212002400 Weak transcription Fetal Stomach stomach
42 chr1:211997800-212002600 Weak transcription Colonic Mucosa Colon
43 chr1:211997800-212003000 Weak transcription Esophagus oesophagus
44 chr1:211997800-212003000 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:211998000-212002400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:211998400-212002400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:211999200-212001000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:211999200-212001200 Genic enhancers Primary neutrophils fromperipheralblood blood
49 chr1:211999400-212002400 Weak transcription Primary hematopoietic stem cells short term culture blood
50 chr1:211999400-212002800 Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015