Variant report

Variant	rs56160062
Chromosome Location	chr1:212073894-212073895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1065607	0.95[EUR][1000 genomes]
rs10863931	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119812	0.92[EUR][1000 genomes]
rs11119814	0.95[EUR][1000 genomes]
rs11119816	0.95[EUR][1000 genomes]
rs11119823	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1126968	0.92[EUR][1000 genomes]
rs12119787	0.92[EUR][1000 genomes]
rs12120603	0.95[EUR][1000 genomes]
rs12122086	0.95[EUR][1000 genomes]
rs12122929	0.92[EUR][1000 genomes]
rs12123135	0.95[EUR][1000 genomes]
rs12123189	0.95[EUR][1000 genomes]
rs12123889	0.92[EUR][1000 genomes]
rs12125042	0.95[EUR][1000 genomes]
rs12126667	0.95[EUR][1000 genomes]
rs12126742	0.95[EUR][1000 genomes]
rs12128147	0.95[EUR][1000 genomes]
rs12128221	0.92[EUR][1000 genomes]
rs12129315	0.95[EUR][1000 genomes]
rs12129362	0.95[EUR][1000 genomes]
rs12129627	0.92[EUR][1000 genomes]
rs12131727	0.93[EUR][1000 genomes]
rs12134302	0.95[EUR][1000 genomes]
rs12134529	0.86[ASN][1000 genomes]
rs12135924	0.86[ASN][1000 genomes]
rs12136792	0.95[EUR][1000 genomes]
rs12138188	0.95[EUR][1000 genomes]
rs12138283	0.93[EUR][1000 genomes]
rs12138302	0.81[ASN][1000 genomes]
rs12139254	0.93[EUR][1000 genomes]
rs12139319	0.95[EUR][1000 genomes]
rs12139336	0.92[EUR][1000 genomes]
rs12142878	0.95[EUR][1000 genomes]
rs12144072	0.92[EUR][1000 genomes]
rs12144745	0.92[EUR][1000 genomes]
rs12145346	0.92[EUR][1000 genomes]
rs12145721	0.95[EUR][1000 genomes]
rs12562791	0.95[EUR][1000 genomes]
rs12562933	0.89[EUR][1000 genomes]
rs12563633	0.95[EUR][1000 genomes]
rs12564498	0.95[EUR][1000 genomes]
rs12565318	0.95[EUR][1000 genomes]
rs12565546	0.95[EUR][1000 genomes]
rs12566620	0.92[EUR][1000 genomes]
rs12568179	0.95[EUR][1000 genomes]
rs12724564	0.81[ASN][1000 genomes]
rs17018028	0.92[EUR][1000 genomes]
rs17018048	0.90[EUR][1000 genomes]
rs17042024	0.92[EUR][1000 genomes]
rs2298095	0.92[EUR][1000 genomes]
rs28695463	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4132401	0.97[EUR][1000 genomes]
rs4364936	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55648545	0.95[EUR][1000 genomes]
rs55687837	0.95[EUR][1000 genomes]
rs55794431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836176	0.95[EUR][1000 genomes]
rs55843903	0.92[EUR][1000 genomes]
rs56028546	0.95[EUR][1000 genomes]
rs56074728	0.95[EUR][1000 genomes]
rs56225609	0.92[EUR][1000 genomes]
rs56295475	0.92[EUR][1000 genomes]
rs56318540	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72746513	0.92[EUR][1000 genomes]
rs72746521	0.92[EUR][1000 genomes]
rs72746525	0.92[EUR][1000 genomes]
rs72746529	0.92[EUR][1000 genomes]
rs72746531	0.89[EUR][1000 genomes]
rs72746535	0.92[EUR][1000 genomes]
rs72746563	0.95[EUR][1000 genomes]
rs72746569	0.95[EUR][1000 genomes]
rs72746572	0.97[EUR][1000 genomes]
rs72746579	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72746583	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747044	0.90[EUR][1000 genomes]
rs72747049	0.92[EUR][1000 genomes]
rs72748518	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72748525	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212063200-212074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:212069200-212075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:212073800-212074000	Enhancers	Fetal Intestine Large	intestine
4	chr1:212073800-212074000	Enhancers	Fetal Intestine Small	intestine
5	chr1:212073800-212074400	Weak transcription	GM12878-XiMat	blood

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