The 2.0 version of rSNPBase

Variant report

Variant rs56028546
Chromosome Location chr1:211973252-211973253
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211914000-211973600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr1:211915800-211991800 Weak transcription Muscle Satellite Cultured Cells --
3 chr1:211916800-211994200 Weak transcription Fetal Brain Male brain
4 chr1:211919200-212001200 Weak transcription Gastric stomach
5 chr1:211923000-211991800 Weak transcription HSMM muscle
6 chr1:211924000-212002400 Weak transcription NHLF lung
7 chr1:211938200-211999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:211939600-211978200 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:211939600-211992600 Weak transcription Esophagus oesophagus
10 chr1:211939800-212002400 Weak transcription HSMMtube muscle
11 chr1:211940000-212000600 Weak transcription Rectal Smooth Muscle rectum
12 chr1:211945800-211979000 Weak transcription Colon Smooth Muscle Colon
13 chr1:211946200-211984200 Weak transcription NH-A brain
14 chr1:211947400-212002400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:211950000-211987000 Weak transcription Fetal Thymus thymus
16 chr1:211951400-211978800 Weak transcription Fetal Lung lung
17 chr1:211951400-211992600 Weak transcription Ovary ovary
18 chr1:211952200-212003000 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:211957600-211985200 Weak transcription Brain Germinal Matrix brain
20 chr1:211957600-211998800 Weak transcription NHDF-Ad bronchial
21 chr1:211957600-212000800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:211957800-211973600 Weak transcription K562 blood
23 chr1:211958000-211984200 Weak transcription HUVEC blood vessel
24 chr1:211960800-211982200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:211960800-211987600 Weak transcription Pancreas Pancrea
26 chr1:211961200-212002200 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr1:211962400-211978600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:211962600-211983000 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr1:211963600-211985800 Weak transcription Hela-S3 cervix
30 chr1:211965600-211974600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr1:211965800-211974200 Weak transcription NHEK skin
32 chr1:211965800-211976400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:211965800-211976600 Weak transcription Fetal Kidney kidney
34 chr1:211965800-211978800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:211965800-211985400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:211965800-211992600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:211965800-212002200 Weak transcription Primary T cells from cord blood blood
38 chr1:211966000-211979000 Weak transcription Fetal Brain Female brain
39 chr1:211966400-211974400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:211966400-211983000 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:211966400-211997400 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:211966400-212002400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr1:211966600-211974600 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:211966600-211975600 Weak transcription Fetal Muscle Leg muscle
45 chr1:211966600-211976000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:211966600-211978600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:211966600-211979200 Weak transcription Aorta Aorta
48 chr1:211966600-211983200 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:211966600-211983800 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:211966600-211984000 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015