The 2.0 version of rSNPBase

Variant report

Variant rs12565546
Chromosome Location chr1:211987179-211987180
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211915800-211991800 Weak transcription Muscle Satellite Cultured Cells --
2 chr1:211916800-211994200 Weak transcription Fetal Brain Male brain
3 chr1:211919200-212001200 Weak transcription Gastric stomach
4 chr1:211923000-211991800 Weak transcription HSMM muscle
5 chr1:211924000-212002400 Weak transcription NHLF lung
6 chr1:211938200-211999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:211939600-211992600 Weak transcription Esophagus oesophagus
8 chr1:211939800-212002400 Weak transcription HSMMtube muscle
9 chr1:211940000-212000600 Weak transcription Rectal Smooth Muscle rectum
10 chr1:211947400-212002400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:211951400-211992600 Weak transcription Ovary ovary
12 chr1:211952200-212003000 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:211957600-211998800 Weak transcription NHDF-Ad bronchial
14 chr1:211957600-212000800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr1:211960800-211987600 Weak transcription Pancreas Pancrea
16 chr1:211961200-212002200 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr1:211965800-211992600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:211965800-212002200 Weak transcription Primary T cells from cord blood blood
19 chr1:211966400-211997400 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:211966400-212002400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:211966600-211987200 Weak transcription Stomach Smooth Muscle stomach
22 chr1:211966600-211988800 Weak transcription Lung lung
23 chr1:211966600-211992600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:211966600-211997400 Weak transcription Spleen Spleen
25 chr1:211967000-211998800 Weak transcription Osteobl bone
26 chr1:211970000-211988800 Weak transcription Adipose Nuclei Adipose
27 chr1:211970800-211990600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr1:211971800-212002400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:211972400-211987600 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:211973200-211987600 Weak transcription Right Ventricle heart
31 chr1:211974000-212001200 Weak transcription Small Intestine intestine
32 chr1:211975200-211992000 Weak transcription Primary T cells fromperipheralblood blood
33 chr1:211976800-211991400 Weak transcription Dnd41 blood
34 chr1:211976800-211997000 Weak transcription Fetal Kidney kidney
35 chr1:211977600-211987400 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr1:211978000-211988200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
37 chr1:211979400-211989400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:211979400-212000600 Weak transcription Aorta Aorta
39 chr1:211981200-211997200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:211982200-211989600 Strong transcription Fetal Intestine Large intestine
41 chr1:211982600-211992400 Weak transcription Fetal Stomach stomach
42 chr1:211983000-211989800 Strong transcription Primary B cells from peripheral blood blood
43 chr1:211983000-212002400 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr1:211983200-212002400 Weak transcription Thymus Thymus
45 chr1:211983400-211987400 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr1:211984200-211987600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr1:211984400-211987400 Weak transcription Fetal Brain Female brain
48 chr1:211984400-211987600 Weak transcription Fetal Lung lung
49 chr1:211984600-211987800 Strong transcription Primary hematopoietic stem cells blood
50 chr1:211984600-212002400 Weak transcription NH-A brain

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Last update: Aug 31, 2015