Variant report

Variant	rs12735358
Chromosome Location	chr1:212098032-212098033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211848815..211850786-chr1:212097996..212100036,2	K562	blood:
2	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231057	Chromatin interaction
ENSG00000117650	Chromatin interaction

rs_ID	r²[population]
rs1065607	0.85[CEU][hapmap]
rs11119810	0.86[CHB][hapmap]
rs11119816	0.85[CEU][hapmap]
rs11119825	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs11119826	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs11119827	0.90[CHB][hapmap]
rs12120122	0.82[JPT][hapmap]
rs12122247	0.90[CHB][hapmap]
rs12122488	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12123135	0.88[CHB][hapmap]
rs12125042	1.00[CHB][hapmap]
rs12125159	0.90[CHB][hapmap]
rs12126761	0.90[CHB][hapmap]
rs12128256	0.82[JPT][hapmap]
rs12130548	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12131060	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12132233	0.90[CHB][hapmap]
rs12135924	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12145020	0.90[CHB][hapmap]
rs12145721	0.85[CEU][hapmap]
rs12566620	0.85[CEU][hapmap]
rs12723988	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12724564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12747761	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17018028	1.00[CHB][hapmap]
rs17018421	0.82[JPT][hapmap]
rs17018532	0.82[JPT][hapmap]
rs17042024	0.88[CHB][hapmap]
rs3795836	0.90[CHB][hapmap]
rs7526682	1.00[CHB][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
4	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
5	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
6	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:212093800-212098200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:212093800-212101800	Weak transcription	Gastric	stomach
9	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
10	chr1:212094400-212098200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:212094400-212101400	Weak transcription	Stomach Mucosa	stomach
12	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:212094600-212098400	Weak transcription	Hela-S3	cervix
14	chr1:212095400-212101800	Weak transcription	Right Atrium	heart
15	chr1:212095600-212098400	Weak transcription	A549	lung
16	chr1:212096200-212098400	Weak transcription	HepG2	liver
17	chr1:212096200-212098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:212096600-212101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:212096800-212098800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:212097200-212098600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:212097400-212098400	Weak transcription	HMEC	breast
22	chr1:212097400-212098400	Weak transcription	NHEK	skin
23	chr1:212097800-212098200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:212098000-212098400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:212098000-212098800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:212098000-212099200	Enhancers	Fetal Muscle Leg	muscle

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