Variant report

Variant	rs12128256
Chromosome Location	chr1:212111937-212111938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212110628..212113045-chr1:212117241..212119498,2	K562	blood:
2	chr1:212107032..212109666-chr1:212109866..212112010,2	MCF-7	breast:
3	chr1:212111076..212113509-chr1:212207487..212209530,2	K562	blood:

Variant related genes	Relation type
ENSG00000143476	Chromatin interaction
ENSG00000143493	Chromatin interaction
ENSG00000233626	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1042928	1.00[JPT][hapmap]
rs11119825	1.00[JPT][hapmap]
rs11119826	1.00[JPT][hapmap]
rs11119827	1.00[JPT][hapmap]
rs12120122	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120150	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121059	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12122247	1.00[JPT][hapmap]
rs12122488	1.00[JPT][hapmap]
rs12125159	1.00[JPT][hapmap]
rs12126761	1.00[JPT][hapmap]
rs12130548	1.00[JPT][hapmap]
rs12131060	1.00[JPT][hapmap]
rs12131750	1.00[CHB][hapmap]
rs12132233	1.00[JPT][hapmap]
rs12132954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145020	1.00[JPT][hapmap]
rs12146085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12723988	1.00[JPT][hapmap]
rs12735358	0.82[JPT][hapmap]
rs12747761	1.00[JPT][hapmap]
rs17018334	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17018421	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17018532	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050954	1.00[JPT][hapmap]
rs2200944	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3762453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3795836	1.00[JPT][hapmap]
rs7526682	1.00[JPT][hapmap]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212102400-212113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:212102600-212115200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:212102600-212120400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:212102800-212114400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:212102800-212115000	Weak transcription	Fetal Thymus	thymus
7	chr1:212102800-212115200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:212103000-212132600	Weak transcription	Gastric	stomach
9	chr1:212103200-212115000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:212103200-212115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:212103200-212115200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:212103200-212115200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:212103400-212113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:212103400-212113200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:212103600-212115000	Weak transcription	NHEK	skin
16	chr1:212103600-212115400	Weak transcription	HMEC	breast
17	chr1:212103600-212132200	Weak transcription	Esophagus	oesophagus
18	chr1:212103800-212132200	Weak transcription	NHLF	lung
19	chr1:212104000-212117600	Weak transcription	HepG2	liver
20	chr1:212104200-212115000	Weak transcription	Lung	lung
21	chr1:212104800-212114800	Weak transcription	Hela-S3	cervix
22	chr1:212104800-212124400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:212106200-212148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:212106400-212115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:212106400-212132400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:212106400-212132600	Weak transcription	Right Ventricle	heart
27	chr1:212106400-212147800	Weak transcription	NH-A	brain
28	chr1:212106800-212112200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:212106800-212113400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:212107000-212115000	Weak transcription	Placenta	Placenta
31	chr1:212107000-212115200	Weak transcription	HSMM	muscle
32	chr1:212107000-212118000	Weak transcription	HSMMtube	muscle
33	chr1:212107000-212132800	Weak transcription	Pancreas	Pancrea
34	chr1:212107200-212116600	Weak transcription	HUVEC	blood vessel
35	chr1:212107400-212115000	Weak transcription	Fetal Brain Female	brain
36	chr1:212108000-212115000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:212108000-212132400	Weak transcription	Spleen	Spleen
38	chr1:212108200-212115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:212108400-212115200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:212108400-212117800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr1:212108600-212115200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr1:212109000-212113400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:212109000-212114400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:212109200-212114400	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:212109200-212115200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr1:212109200-212118000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:212109200-212118000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr1:212109200-212118400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:212109200-212132800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:212110200-212114800	Weak transcription	Fetal Stomach	stomach

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