Variant report

Variant	rs12121059
Chromosome Location	chr1:212049863-212049864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12120122	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12120150	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12128256	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12132954	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12146085	0.91[EUR][1000 genomes]
rs17018334	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17018421	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2200944	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3762453	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212048600-212050400	Weak transcription	Adipose Nuclei	Adipose
2	chr1:212049800-212050200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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