The 2.0 version of rSNPBase

Variant report

Variant rs2200944
Chromosome Location chr1:212242989-212242990
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212209600-212253000 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:212214400-212278000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:212229600-212255400 Weak transcription NHLF lung
4 chr1:212229600-212266600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:212229800-212243400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:212229800-212255800 Weak transcription Thymus Thymus
7 chr1:212229800-212261000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr1:212229800-212261200 Weak transcription Fetal Stomach stomach
9 chr1:212229800-212261400 Weak transcription Fetal Intestine Small intestine
10 chr1:212229800-212263000 Weak transcription Duodenum Mucosa Duodenum
11 chr1:212229800-212266400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:212230000-212243400 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr1:212230000-212249800 Weak transcription NHEK skin
14 chr1:212230000-212255200 Weak transcription Muscle Satellite Cultured Cells --
15 chr1:212230000-212255400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:212230000-212261200 Weak transcription Osteobl bone
17 chr1:212230000-212265200 Strong transcription HUES64 Cell Line embryonic stem cell
18 chr1:212230600-212243600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr1:212230800-212261800 Weak transcription Primary B cells from cord blood blood
20 chr1:212231000-212255400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:212231400-212243200 Weak transcription HSMM muscle
22 chr1:212231400-212253000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:212231400-212261800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:212231600-212245200 Weak transcription Fetal Lung lung
25 chr1:212233000-212255000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:212233000-212266400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:212234000-212265400 Strong transcription HUES48 Cell Line embryonic stem cell
28 chr1:212234000-212265800 Strong transcription HUES6 Cell Line embryonic stem cell
29 chr1:212234200-212267400 Strong transcription Dnd41 blood
30 chr1:212236000-212265200 Strong transcription K562 blood
31 chr1:212236800-212249200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr1:212236800-212250200 Strong transcription Fetal Thymus thymus
33 chr1:212237000-212261200 Strong transcription Primary hematopoietic stem cells short term culture blood
34 chr1:212237000-212266200 Strong transcription iPS-20b Cell Line embryonic stem cell
35 chr1:212237200-212267000 Strong transcription iPS-18 Cell Line embryonic stem cell
36 chr1:212237400-212244200 Strong transcription GM12878-XiMat blood
37 chr1:212237400-212250000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:212237600-212243600 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr1:212237600-212246800 Strong transcription H1 Cell Line embryonic stem cell
40 chr1:212237600-212248600 Strong transcription A549 lung
41 chr1:212237600-212260800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:212237600-212266800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:212237800-212262000 Strong transcription Hela-S3 cervix
44 chr1:212238000-212251600 Weak transcription NHDF-Ad bronchial
45 chr1:212238000-212251800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr1:212238200-212261200 Weak transcription NH-A brain
47 chr1:212238400-212243400 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:212238400-212253200 Weak transcription Fetal Muscle Trunk muscle
49 chr1:212239000-212253200 Weak transcription Fetal Muscle Leg muscle
50 chr1:212239400-212243400 Strong transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015