Variant report

Variant	rs72755782
Chromosome Location	chr5:57616788-57616789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10038594	1.00[AFR][1000 genomes]
rs10040157	1.00[AFR][1000 genomes]
rs10042036	1.00[AFR][1000 genomes]
rs10471451	1.00[AFR][1000 genomes]
rs28537683	1.00[AFR][1000 genomes]
rs72758111	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57611000-57618400	Weak transcription	HMEC	breast
4	chr5:57611200-57618600	Weak transcription	NHEK	skin
5	chr5:57611400-57617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57611800-57618200	Weak transcription	A549	lung
7	chr5:57613200-57616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:57613200-57618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:57613400-57618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57614600-57618200	Weak transcription	HSMM	muscle
11	chr5:57614800-57617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57614800-57617800	Weak transcription	NHDF-Ad	bronchial
13	chr5:57614800-57618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:57615000-57617600	Weak transcription	HUVEC	blood vessel
15	chr5:57615000-57617800	Weak transcription	Osteobl	bone
16	chr5:57616400-57620200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:57616600-57619800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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