Variant report

Variant	rs10042036
Chromosome Location	chr5:57649291-57649292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10035488	0.83[EUR][1000 genomes]
rs10038594	1.00[AFR][1000 genomes]
rs10040157	1.00[AFR][1000 genomes]
rs10040280	0.82[EUR][1000 genomes]
rs10070290	0.83[EUR][1000 genomes]
rs10471450	0.82[EUR][1000 genomes]
rs10471451	1.00[AFR][1000 genomes]
rs10472054	0.84[EUR][1000 genomes]
rs10472060	0.83[EUR][1000 genomes]
rs10472061	0.82[EUR][1000 genomes]
rs12188948	0.83[EUR][1000 genomes]
rs1508904	0.82[EUR][1000 genomes]
rs17765997	0.82[EUR][1000 genomes]
rs1848512	0.83[EUR][1000 genomes]
rs2021394	0.84[EUR][1000 genomes]
rs2021395	0.84[EUR][1000 genomes]
rs2047751	0.84[EUR][1000 genomes]
rs28459538	0.83[EUR][1000 genomes]
rs28475041	0.82[EUR][1000 genomes]
rs28537683	1.00[AFR][1000 genomes]
rs3846534	0.83[EUR][1000 genomes]
rs56242962	0.82[EUR][1000 genomes]
rs59595416	0.84[EUR][1000 genomes]
rs60482268	0.83[EUR][1000 genomes]
rs72755782	1.00[AFR][1000 genomes]
rs72758111	1.00[AFR][1000 genomes]
rs72758116	0.83[EUR][1000 genomes]
rs72758120	0.82[EUR][1000 genomes]
rs72758121	0.81[EUR][1000 genomes]
rs7717376	0.84[EUR][1000 genomes]
rs9292160	0.83[EUR][1000 genomes]
rs984147	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57645800-57649800	Weak transcription	Placenta	Placenta
3	chr5:57647000-57649800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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