Variant report

Variant	rs72758120
Chromosome Location	chr5:57664960-57664961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57660346..57663581-chr5:57663913..57666840,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10035488	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10042036	0.82[EUR][1000 genomes]
rs10070290	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10472048	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10472049	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10472054	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10472060	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12188948	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1508904	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17765151	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17765997	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1848512	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021394	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2021395	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2047751	0.96[EUR][1000 genomes]
rs244699	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs244701	0.82[AFR][1000 genomes]
rs244702	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs26977	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs27937	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28459538	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28475041	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs378828	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3846534	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs40169	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56242962	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59497655	0.82[EUR][1000 genomes]
rs59595416	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60482268	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450473	0.82[EUR][1000 genomes]
rs72758116	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72758121	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7717376	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9292159	0.82[EUR][1000 genomes]
rs9292160	0.95[EUR][1000 genomes]
rs984147	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57664400-57666400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links