Variant report

Variant	rs9292159
Chromosome Location	chr5:57641372-57641373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57640162..57641929-chr5:57650498..57652740,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10035488	0.82[EUR][1000 genomes]
rs10040280	0.82[EUR][1000 genomes]
rs10070290	0.82[EUR][1000 genomes]
rs10471450	0.82[EUR][1000 genomes]
rs10472048	0.96[EUR][1000 genomes]
rs10472049	0.96[EUR][1000 genomes]
rs10472054	0.84[EUR][1000 genomes]
rs10472060	0.82[EUR][1000 genomes]
rs10472061	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12188948	0.82[EUR][1000 genomes]
rs12652282	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12652773	0.89[ASN][1000 genomes]
rs12654923	0.89[ASN][1000 genomes]
rs13328216	0.99[EUR][1000 genomes]
rs1508904	0.82[EUR][1000 genomes]
rs17764708	0.90[TSI][hapmap]
rs17765151	0.99[EUR][1000 genomes]
rs17765997	0.82[EUR][1000 genomes]
rs1848512	0.83[EUR][1000 genomes]
rs185425	0.95[MEX][hapmap]
rs2021394	0.84[EUR][1000 genomes]
rs2021395	0.84[EUR][1000 genomes]
rs2033227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2047751	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs245494	0.81[MKK][hapmap]
rs2662609	0.82[YRI][hapmap]
rs27937	0.85[TSI][hapmap]
rs28459538	0.82[EUR][1000 genomes]
rs28475041	0.81[EUR][1000 genomes]
rs3846534	0.95[CEU][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs4699921	0.85[ASN][1000 genomes]
rs56242962	0.82[EUR][1000 genomes]
rs59497655	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59595416	0.84[EUR][1000 genomes]
rs60482268	0.83[EUR][1000 genomes]
rs62366315	0.89[ASN][1000 genomes]
rs62366336	0.98[ASN][1000 genomes]
rs62366338	0.98[ASN][1000 genomes]
rs62366339	0.92[ASN][1000 genomes]
rs6450473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72758116	0.83[EUR][1000 genomes]
rs72758120	0.82[EUR][1000 genomes]
rs72758121	0.82[EUR][1000 genomes]
rs7717376	0.84[EUR][1000 genomes]
rs7722936	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292160	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs984147	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9292159	SKIV2L2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57637000-57642200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:57638000-57641400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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