Variant report

Variant	rs17765151
Chromosome Location	chr5:57642789-57642790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10035488	0.84[EUR][1000 genomes]
rs10040280	0.83[EUR][1000 genomes]
rs10070290	0.84[EUR][1000 genomes]
rs10471450	0.83[EUR][1000 genomes]
rs10472048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10472049	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10472054	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10472060	0.84[EUR][1000 genomes]
rs10472061	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs12188948	0.84[EUR][1000 genomes]
rs13328216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1428376	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1508904	0.83[EUR][1000 genomes]
rs17765997	0.83[EUR][1000 genomes]
rs1848512	0.84[EUR][1000 genomes]
rs2021394	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2021395	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2047751	0.85[EUR][1000 genomes]
rs28459538	0.84[EUR][1000 genomes]
rs28475041	0.82[EUR][1000 genomes]
rs3846534	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs56242962	0.83[EUR][1000 genomes]
rs59497655	0.99[EUR][1000 genomes]
rs59595416	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60482268	0.84[EUR][1000 genomes]
rs6450473	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs72755777	0.88[AFR][1000 genomes]
rs72755778	0.88[AFR][1000 genomes]
rs72755779	0.88[AFR][1000 genomes]
rs72755784	0.92[AFR][1000 genomes]
rs72755786	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72755793	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72755795	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758116	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758120	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758121	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7717376	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7722936	0.94[EUR][1000 genomes]
rs9292159	0.99[EUR][1000 genomes]
rs9292160	0.84[EUR][1000 genomes]
rs984147	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57641400-57642800	Enhancers	Placenta	Placenta
3	chr5:57642200-57642800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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