Variant report

Variant	rs72755778
Chromosome Location	chr5:57611114-57611115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10472048	0.88[AFR][1000 genomes]
rs1428376	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17764708	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17765151	0.88[AFR][1000 genomes]
rs72755777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72755779	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755784	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755786	0.91[EUR][1000 genomes]
rs72755793	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72755795	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57608400-57616600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:57609200-57615400	Weak transcription	Psoas Muscle	Psoas
3	chr5:57610000-57611200	Enhancers	Hela-S3	cervix
4	chr5:57610000-57611200	Enhancers	NHEK	skin
5	chr5:57610200-57611200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57610200-57611200	Enhancers	A549	lung
7	chr5:57610200-57611400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:57610400-57611200	Enhancers	HUVEC	blood vessel
9	chr5:57610400-57611600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:57611000-57618400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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