Variant report

Variant	rs72755779
Chromosome Location	chr5:57615302-57615303
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10472048	0.88[AFR][1000 genomes]
rs1428376	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17764708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17765151	0.88[AFR][1000 genomes]
rs72755777	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755778	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72755786	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72755793	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72755795	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57608400-57616600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:57609200-57615400	Weak transcription	Psoas Muscle	Psoas
3	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:57611000-57618400	Weak transcription	HMEC	breast
6	chr5:57611200-57618600	Weak transcription	NHEK	skin
7	chr5:57611400-57617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:57611800-57618200	Weak transcription	A549	lung
9	chr5:57613200-57616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:57613200-57618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:57613400-57618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:57614600-57618200	Weak transcription	HSMM	muscle
13	chr5:57614800-57617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:57614800-57617800	Weak transcription	NHDF-Ad	bronchial
15	chr5:57614800-57618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:57615000-57617600	Weak transcription	HUVEC	blood vessel
17	chr5:57615000-57617800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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