Variant report

Variant	rs72755784
Chromosome Location	chr5:57617719-57617720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57611976..57614758-chr5:57615507..57618157,2	MCF-7	breast:
2	chr5:57615984..57618910-chr5:57754343..57756534,2	MCF-7	breast:
3	chr5:57609295..57611170-chr5:57616223..57618224,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10472048	0.92[AFR][1000 genomes]
rs1428376	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17764708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17765151	0.92[AFR][1000 genomes]
rs72755777	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755778	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72755786	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72755793	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72755795	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57611000-57618400	Weak transcription	HMEC	breast
4	chr5:57611200-57618600	Weak transcription	NHEK	skin
5	chr5:57611800-57618200	Weak transcription	A549	lung
6	chr5:57613200-57618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:57613400-57618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:57614600-57618200	Weak transcription	HSMM	muscle
9	chr5:57614800-57617800	Weak transcription	NHDF-Ad	bronchial
10	chr5:57614800-57618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57615000-57617800	Weak transcription	Osteobl	bone
12	chr5:57616400-57620200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:57616600-57619800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:57616800-57617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:57616800-57617800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:57617200-57617800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:57617400-57617800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:57617400-57618200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr5:57617400-57618400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:57617400-57618400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:57617400-57619600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr5:57617600-57618200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr5:57617600-57619000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:57617600-57619000	Enhancers	HUVEC	blood vessel
25	chr5:57617600-57622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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