Variant report
| Variant | rs72755777 |
|---|---|
| Chromosome Location | chr5:57608276-57608277 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10472048 | 0.88[AFR][1000 genomes] |
| rs1428376 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17764708 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17765151 | 0.88[AFR][1000 genomes] |
| rs72755778 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72755779 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72755784 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72755786 | 0.91[EUR][1000 genomes] |
| rs72755793 | 0.84[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72755795 | 0.88[AFR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3489100 | chr5:57545689-57669673 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3489101 | chr5:57545689-57669673 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
