Variant report

Variant	rs984147
Chromosome Location	chr5:57666469-57666470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57660346..57663581-chr5:57663913..57666840,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10035488	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10042036	0.83[EUR][1000 genomes]
rs10070290	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472048	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10472049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10472054	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472060	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12188948	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1428376	0.82[YRI][hapmap]
rs1477347	0.87[YRI][hapmap]
rs1508904	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17763980	0.89[YRI][hapmap]
rs17765151	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17765997	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1848512	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2021394	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2021395	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2047751	0.96[EUR][1000 genomes]
rs28459538	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28475041	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3846534	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56242962	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59497655	0.83[EUR][1000 genomes]
rs59595416	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60482268	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6450473	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs72758116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758120	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72758121	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7717376	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9292159	0.83[EUR][1000 genomes]
rs9292160	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57665600-57666600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:57665600-57667200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:57666000-57666800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:57666000-57667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:57666000-57667200	Enhancers	Fetal Brain Male	brain
6	chr5:57666400-57666800	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr5:57666400-57667000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:57666400-57667000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:57666400-57667200	Active TSS	Brain Germinal Matrix	brain
10	chr5:57666400-57667200	Enhancers	Fetal Brain Female	brain

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