Variant report

Variant	rs28475041
Chromosome Location	chr5:57694307-57694308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10035488	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040280	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10042036	0.82[EUR][1000 genomes]
rs10070290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10471450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10472054	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10472060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10472061	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12188948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13328216	0.82[EUR][1000 genomes]
rs1508904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17765151	0.82[EUR][1000 genomes]
rs17765997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1848512	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2021394	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2021395	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2047751	0.94[EUR][1000 genomes]
rs28459538	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3846534	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56242962	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59497655	0.81[EUR][1000 genomes]
rs59595416	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60482268	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6450473	0.81[EUR][1000 genomes]
rs72758116	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758120	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72758121	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7717376	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9292159	0.81[EUR][1000 genomes]
rs9292160	0.94[EUR][1000 genomes]
rs984147	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57690800-57694400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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